MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:49.6 nTPM
FANTOM5:129.0 Scaled Tags Per Million
Pig:79.8 nTPM
Mouse:305.2 nTPM
Allen mouse:16.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
2411 Female, age 72, unknown 45.8
1827 Male, age 72, unknown 39.5
1870 Female, age 42, unknown 33.8
2019 Male, age 18, unknown 33.6
2666 Male, age 74, left hemisphere 33.3
2219 Male, age 76, both hemispheres 32.5
1833 Male, age 53, unknown 32.1
2586 Male, age 75, left hemisphere 29.9
1830 Male, age 51, unknown 28.4
2828 Female, age 72, unknown 27.8
Dorsal raphe nucleus
nTPM: 37.5
2298 Female, age 72, unknown 46.0
2047 Male, age 72, unknown 36.7
2750 Male, age 76, both hemispheres 36.4
2016 Female, age 72, unknown 34.8
1828 Male, age 53, unknown 33.7
Inferior colliculus
nTPM: 33.2
2097 Female, age 72, unknown 35.6
1890 Male, age 53, unknown 35.2
1848 Female, age 42, unknown 32.7
2849 Male, age 72, unknown 29.4
Median raphe nucleus
nTPM: 33.0
2220 Male, age 76, midline 33.0
Pedunculopontine tegmental nucleus
nTPM: 35.8
1921 Female, age 85, both hemispheres 40.5
2334 Male, age 80, both hemispheres 37.8
2338 Male, age 61, both hemispheres 29.2
Periaquaductal grey, anterior
nTPM: 37.1
2502 Female, age 75, unknown 39.5
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 35.4
Periaquaductal grey, dorsal
nTPM: 36.6
1840 Male, age 53, unknown 42.6
2464 Female, age 72, unknown 36.0
2850 Male, age 76, both hemispheres 34.8
1831 Male, age 72, unknown 32.9
Periaquaductal grey, lateral
nTPM: 31.3
2053 Male, age 18, unknown 35.6
2140 Male, age 76, both hemispheres 30.6
2272 Male, age 74, both hemispheres 27.7
Pretectal area
nTPM: 37.6
1816 Male, age 51, unknown 45.0
2224 Female, age 72, unknown 42.6
2007 Male, age 72, unknown 41.9
1944 Female, age 72, unknown 40.2
1817 Female, age 42, unknown 39.9
1815 Male, age 53, unknown 37.9
2667 Female, age 75, unknown 37.6
2273 Male, age 74, both hemispheres 33.0
2825 Male, age 18, unknown 32.6
2407 Male, age 75, both hemispheres 32.1
2316 Male, age 76, right hemisphere 30.3
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 38.6
2503 Female, age 72, unknown 33.7
2785 Male, age 18, unknown 31.5
2725 Female, age 75, unknown 31.4
1954 Female, age 42, unknown 30.6
1904 Male, age 53, unknown 30.4
1865 Male, age 51, unknown 30.3
2588 Male, age 74, left hemisphere 30.2
2823 Male, age 76, right hemisphere 29.3
2769 Male, age 72, unknown 28.9
2584 Male, age 75, left hemisphere 28.4
2227 Male, age 72, unknown 27.5
Substantia nigra
nTPM: 40.1
2241 Male, age 72, unknown 49.3
1916 Female, age 42, unknown 48.9
1851 Male, age 51, unknown 48.1
1889 Female, age 72, unknown 41.6
2409 Female, age 72, unknown 41.2
2665 Male, age 74, both hemispheres 39.7
2699 Male, age 18, unknown 37.3
1941 Male, age 53, unknown 34.5
2583 Male, age 75, right hemisphere 30.3
2590 Female, age 75, unknown 30.0
Superior colliculus
nTPM: 35.9
2668 Female, age 75, unknown 42.8
2587 Male, age 74, left hemisphere 42.2
1895 Male, age 76, right hemisphere 39.0
1796 Male, age 53, unknown 38.8
2087 Female, age 72, unknown 37.4
2261 Male, age 18, unknown 37.2
1839 Male, age 51, unknown 32.0
1913 Female, age 42, unknown 32.0
1995 Male, age 72, unknown 32.0
2664 Male, age 75, both hemispheres 25.6
Ventral tegmental area
nTPM: 38.8
2410 Female, age 72, unknown 46.9
1915 Female, age 42, unknown 41.9
2021 Male, age 53, unknown 37.3
2218 Male, age 76, both hemispheres 36.1
1942 Male, age 51, unknown 36.0
2223 Female, age 72, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.6
Samples: 139

Max nTPM: 121.8
Min nTPM: 15.5
Std nTPM: 16.4
Median nTPM: 47.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 121.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 115.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 98.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 88.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 83.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 79.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 75.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 73.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 69.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 68.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.0
FF:10158-103A5 76 years, female 129.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.8
Pig sample Sample description nTPM
Midbrain
nTPM: 79.8
Samples: 4

Max nTPM: 94.3
Min nTPM: 68.9
Sample A Female 94.3
Sample B Female 68.9
Sample C Male 81.4
Sample D Male 74.4
Periaqueductal gray
nTPM: 69.9
Samples: 3

Max nTPM: 80.4
Min nTPM: 60.5
Sample B Female 68.9
Sample C Male 80.4
Sample D Male 60.5
Substantia nigra
nTPM: 75.1
Samples: 4

Max nTPM: 105.6
Min nTPM: 53.0
Sample A Female 105.6
Sample B Female 60.8
Sample C Male 80.8
Sample D Male 53.0
Superior colliculi
nTPM: 78.1
Samples: 4

Max nTPM: 94.2
Min nTPM: 63.6
Sample A Female 94.2
Sample B Female 63.6
Sample C Male 81.3
Sample D Male 73.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 305.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 305.2
Samples: 4

Max nTPM: 311.9
Min nTPM: 294.5
Sample A Male 303.8
Sample B Male 311.9
Sample C Female 310.4
Sample D Female 294.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.6
70919698 Antisense, RP_050713_01_H06, Mouse strain C57BL/6J (56 days, male) 17.4
544899 Antisense, RP_040617_02_H01, Mouse strain C57BL/6J (56 days, male) 15.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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