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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:27.6 nTPM
GTEx:104.5 nTPM
FANTOM5:685.6 Scaled Tags Per Million
Pig:177.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 27.6
Sample id Sample description nTPM
Putamen
nTPM: 27.6
1937 Female, age 91, right hemisphere 54.8
1838 Male, age 80, right hemisphere 43.8
2466 Female, age 79, unknown 24.2
2647 Male, age 75, left hemisphere 22.7
1829 Male, age 74, unknown 19.3
2482 Female, age 94, left hemisphere 16.2
2489 Female, age 72, unknown 12.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.5
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 104.5
Samples: 205

Max nTPM: 263.9
Min nTPM: 2.5
Std nTPM: 62.9
Median nTPM: 103.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 263.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 260.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 250.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 240.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 235.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 233.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 230.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 226.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 224.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 221.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 221.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 217.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 205.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 202.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 199.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 191.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 189.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 184.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 183.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 183.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 178.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 177.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 177.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 175.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 175.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 174.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 174.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 174.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 173.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 173.2
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 172.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 171.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 171.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 170.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 170.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 167.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 167.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 165.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 165.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 165.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 165.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 164.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 164.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 163.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 159.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 158.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 156.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 156.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 156.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 153.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 153.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 151.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 151.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 151.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 150.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 149.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 149.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 148.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 147.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 145.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 145.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 144.0
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 141.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 140.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 138.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 138.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 137.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 137.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 136.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 136.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 135.0
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 134.0
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 131.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 130.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 130.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 130.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 127.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 126.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 123.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 123.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 122.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 122.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 121.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 121.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 120.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 120.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 119.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 118.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 116.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 115.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 114.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 113.9
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 110.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 110.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 110.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 109.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 109.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 109.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 109.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 105.2
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 103.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 103.4
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 103.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 103.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 102.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 101.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 98.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 97.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 97.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 96.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 95.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 95.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 93.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 91.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 90.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 88.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 87.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 87.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 85.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 85.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 83.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 82.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 82.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 82.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 82.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 82.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 81.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 80.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 79.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 79.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 77.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 76.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 75.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 73.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 72.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 72.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 71.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 70.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 69.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 69.5
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 64.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 64.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 63.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 60.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 58.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 57.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 55.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 55.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 55.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 52.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 50.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 49.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 49.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 48.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 45.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 44.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 43.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 42.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 42.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 41.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 38.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 38.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 37.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 37.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 36.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 36.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 36.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 36.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 34.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 33.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 33.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 32.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 32.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 32.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 30.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 29.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 27.7
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 27.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 26.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 25.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 25.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 23.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 21.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 20.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 19.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 19.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 18.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 18.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 18.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 18.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 16.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 16.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 14.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 13.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 12.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 11.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 9.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 8.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 8.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 7.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 5.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 5.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 3.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 2.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 685.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 685.6
FF:10176-103C5 60 years, female 685.6

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 177.6
Pig sample Sample description nTPM
Putamen
nTPM: 177.6
Samples: 4

Max nTPM: 206.9
Min nTPM: 161.4
Sample A Female 164.2
Sample B Female 161.4
Sample C Male 206.9
Sample D Male 178.0

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