MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:147.0 nTPM
HPA:147.0 nTPM
GTEx:161.6 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Pig:62.1 nTPM
Mouse:178.8 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 147.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.5
1870 Female, age 42, unknown 145.7
2411 Female, age 72, unknown 145.6
2019 Male, age 18, unknown 145.1
1827 Male, age 72, unknown 144.5
2828 Female, age 72, unknown 143.9
1830 Male, age 51, unknown 143.6
1833 Male, age 53, unknown 142.2
2219 Male, age 76, both hemispheres 140.1
2666 Male, age 74, left hemisphere 138.7
2586 Male, age 75, left hemisphere 135.6
Dorsal raphe nucleus
nTPM: 141.5
2298 Female, age 72, unknown 142.9
2750 Male, age 76, both hemispheres 142.3
1828 Male, age 53, unknown 141.4
2016 Female, age 72, unknown 140.8
2047 Male, age 72, unknown 139.9
Inferior colliculus
nTPM: 141.2
2097 Female, age 72, unknown 141.8
1890 Male, age 53, unknown 141.7
1848 Female, age 42, unknown 140.8
2849 Male, age 72, unknown 140.6
Median raphe nucleus
nTPM: 144.6
2220 Male, age 76, midline 144.6
Pedunculopontine tegmental nucleus
nTPM: 147.0
2338 Male, age 61, both hemispheres 153.7
2334 Male, age 80, both hemispheres 145.9
1921 Female, age 85, both hemispheres 141.5
Periaquaductal grey, anterior
nTPM: 140.3
1795 Male, age 51, unknown 141.7
1947 Male, age 18, unknown 140.4
2502 Female, age 75, unknown 138.7
Periaquaductal grey, dorsal
nTPM: 140.8
2850 Male, age 76, both hemispheres 145.0
2464 Female, age 72, unknown 139.9
1840 Male, age 53, unknown 139.5
1831 Male, age 72, unknown 139.0
Periaquaductal grey, lateral
nTPM: 143.8
2272 Male, age 74, both hemispheres 146.3
2140 Male, age 76, both hemispheres 144.5
2053 Male, age 18, unknown 140.7
Pretectal area
nTPM: 143.1
2273 Male, age 74, both hemispheres 148.0
1817 Female, age 42, unknown 147.1
1815 Male, age 53, unknown 146.1
1944 Female, age 72, unknown 145.7
2007 Male, age 72, unknown 145.2
2667 Female, age 75, unknown 142.2
2224 Female, age 72, unknown 141.8
1816 Male, age 51, unknown 141.1
2825 Male, age 18, unknown 139.8
2316 Male, age 76, right hemisphere 139.6
2407 Male, age 75, both hemispheres 137.9
Red nucleus
nTPM: 146.2
2503 Female, age 72, unknown 150.8
2725 Female, age 75, unknown 150.6
1865 Male, age 51, unknown 147.8
1904 Male, age 53, unknown 147.1
2785 Male, age 18, unknown 146.6
2769 Male, age 72, unknown 146.4
2227 Male, age 72, unknown 146.2
2823 Male, age 76, right hemisphere 146.0
1954 Female, age 42, unknown 145.7
1821 Female, age 72, unknown 145.2
2588 Male, age 74, left hemisphere 144.6
2584 Male, age 75, left hemisphere 137.5
Substantia nigra
nTPM: 143.9
2409 Female, age 72, unknown 147.9
1916 Female, age 42, unknown 147.5
2699 Male, age 18, unknown 145.9
1851 Male, age 51, unknown 145.8
1889 Female, age 72, unknown 144.5
1941 Male, age 53, unknown 144.0
2583 Male, age 75, right hemisphere 141.5
2590 Female, age 75, unknown 141.5
2241 Male, age 72, unknown 141.0
2665 Male, age 74, both hemispheres 139.1
Superior colliculus
nTPM: 142.0
2587 Male, age 74, left hemisphere 146.2
1913 Female, age 42, unknown 146.0
1995 Male, age 72, unknown 144.2
2261 Male, age 18, unknown 143.0
2668 Female, age 75, unknown 142.7
1796 Male, age 53, unknown 142.6
2087 Female, age 72, unknown 141.9
1839 Male, age 51, unknown 140.3
1895 Male, age 76, right hemisphere 139.8
2664 Male, age 75, both hemispheres 133.7
Ventral tegmental area
nTPM: 144.1
2410 Female, age 72, unknown 148.2
1915 Female, age 42, unknown 146.1
2218 Male, age 76, both hemispheres 145.1
2223 Female, age 72, unknown 143.6
1942 Male, age 51, unknown 141.3
2021 Male, age 53, unknown 140.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.6
Samples: 139

Max nTPM: 385.4
Min nTPM: 95.1
Std nTPM: 38.7
Median nTPM: 154.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 385.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 303.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 255.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 253.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 244.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 243.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 239.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 236.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 230.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 227.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 221.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.9
FF:10158-103A5 76 years, female 96.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.1
Pig sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 93.3
Min nTPM: 44.7
Sample A Female 93.3
Sample B Female 52.7
Sample C Male 57.6
Sample D Male 44.7
Periaqueductal gray
nTPM: 50.1
Samples: 3

Max nTPM: 57.7
Min nTPM: 44.2
Sample B Female 48.4
Sample C Male 57.7
Sample D Male 44.2
Substantia nigra
nTPM: 56.7
Samples: 4

Max nTPM: 73.8
Min nTPM: 46.1
Sample A Female 73.8
Sample B Female 46.1
Sample C Male 56.6
Sample D Male 50.2
Superior colliculi
nTPM: 59.2
Samples: 4

Max nTPM: 71.8
Min nTPM: 54.8
Sample A Female 71.8
Sample B Female 55.1
Sample C Male 55.2
Sample D Male 54.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.9
Samples: 4

Max nTPM: 193.5
Min nTPM: 167.1
Sample A Male 193.5
Sample B Male 175.1
Sample C Female 167.1
Sample D Female 179.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
76097722 Antisense, RP_060626_01_D06, Mouse strain C57BL/6J (56 days, male) 7.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.