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CHMP2A
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:144.9 nTPM
HPA:144.9 nTPM
GTEx:161.3 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:39.3 nTPM
Mouse:179.2 nTPM
Allen mouse:11.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 144.9
Sample id Sample description nTPM
Amygdala
nTPM: 144.9
2814 Male, age 76, right hemisphere 148.1
2695 Female, age 67, right hemisphere 147.5
2514 Male, age 75, right hemisphere 145.4
1987 Female, age 91, left hemisphere 145.1
2517 Female, age 94, left hemisphere 138.2
Basal amygdala
nTPM: 142.7
2243 Female, age 91, right hemisphere 146.5
2110 Male, age 80, left hemisphere 145.2
1955 Male, age 76, both hemispheres 144.6
2685 Female, age 94, left hemisphere 143.6
2609 Male, age 75, right hemisphere 140.4
2827 Female, age 67, right hemisphere 135.8
Central amygdala
nTPM: 141.5
1905 Male, age 76, both hemispheres 143.1
2826 Female, age 94, left hemisphere 142.7
2239 Male, age 80, left hemisphere 142.4
2515 Male, age 75, right hemisphere 140.1
2701 Female, age 91, right hemisphere 139.0
Corticomedial amygdala
nTPM: 142.7
2242 Female, age 91, right hemisphere 146.2
2829 Male, age 80, left hemisphere 145.2
2240 Male, age 76, both hemispheres 144.5
2429 Female, age 94, left hemisphere 143.6
2428 Male, age 75, right hemisphere 142.3
2535 Female, age 67, right hemisphere 134.2
Lateral amygdala
nTPM: 140.0
1883 Male, age 76, both hemispheres 146.4
2516 Male, age 75, right hemisphere 144.6
2256 Male, age 80, left hemisphere 138.6
2534 Female, age 94, left hemisphere 138.2
2255 Female, age 91, right hemisphere 137.5
2830 Female, age 67, right hemisphere 134.6
Stria terminalis, bed nucleus
nTPM: 139.8
1974 Female, age 91, both hemispheres 142.5
2486 Female, age 94, both hemispheres 140.6
2201 Male, age 74, unknown 136.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 161.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 161.3
Samples: 152

Max nTPM: 359.0
Min nTPM: 98.2
Std nTPM: 40.5
Median nTPM: 154.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 359.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 336.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 331.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 296.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 290.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 256.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 247.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 227.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 213.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 211.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 206.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 206.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 205.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 205.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 197.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 196.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 194.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 193.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 193.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 192.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 191.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 189.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 189.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 186.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 185.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 184.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 183.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 182.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 181.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 180.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 178.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 177.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 177.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 176.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 176.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 176.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 176.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 176.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 175.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 174.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 173.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 172.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 172.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 172.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 171.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 170.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 170.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 168.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 167.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 167.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 167.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 166.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 166.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 166.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 166.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 166.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 164.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 163.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 162.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 161.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 161.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 159.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 159.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 159.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 158.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 157.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 157.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 157.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 157.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 156.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 156.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 154.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 154.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 154.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 154.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 154.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 153.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 153.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 152.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 152.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 151.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 150.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 150.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 149.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 148.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 148.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 148.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 148.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 147.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 145.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 145.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 144.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 144.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 144.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 142.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 140.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 140.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 140.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 138.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 138.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 138.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 138.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 137.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 137.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 136.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 135.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 133.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 133.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 133.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 133.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 132.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 131.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 130.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 129.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 128.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 128.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 128.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 127.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 124.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 124.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 124.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 121.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 119.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 119.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 118.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 117.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 113.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 112.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 111.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 98.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 87.1
FF:10151-102I7 76 years, female 87.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.3
Pig sample Sample description nTPM
Amygdala
nTPM: 39.3
Samples: 4

Max nTPM: 51.6
Min nTPM: 32.3
Sample A Female 51.6
Sample B Female 35.6
Sample C Male 37.6
Sample D Male 32.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 179.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 179.3
Samples: 4

Max nTPM: 195.4
Min nTPM: 171.8
Sample A Male 176.5
Sample B Male 195.4
Sample C Female 173.3
Sample D Female 171.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
76097722 Antisense, RP_060626_01_D06, Mouse strain C57BL/6J (56 days, male) 11.6

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