BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.8 nTPM
HPA:1.8 nTPM
GTEx:4.5 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:2.7 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027429
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1854 Male, age 80, left hemisphere 1.7
1857 Female, age 85, left hemisphere 1.7
2288 Male, age 75, left hemisphere 1.7
2290 Female, age 72, unknown 1.7
2846 Female, age 79, unknown 1.7
2289 Male, age 61, right hemisphere 1.6
2481 Female, age 94, left hemisphere 1.6
1781 Male, age 74, unknown 1.4
Claustrum
nTPM: 1.8
2491 Male, age 75, both hemispheres 2.1
2645 Female, age 72, unknown 2.0
2284 Female, age 91, both hemispheres 1.9
2292 Female, age 85, both hemispheres 1.9
2198 Male, age 80, both hemispheres 1.8
2392 Female, age 94, both hemispheres 1.8
1956 Male, age 74, unknown 1.7
2568 Male, age 61, both hemispheres 1.6
2196 Female, age 79, unknown 1.5
Globus pallidus, externus
nTPM: 1.8
1996 Male, age 80, right hemisphere 2.0
2395 Male, age 75, both hemispheres 2.0
2567 Female, age 72, unknown 1.9
2772 Female, age 79, unknown 1.6
2646 Male, age 61, right hemisphere 1.4
Globus pallidus, internus
nTPM: 1.8
2111 Female, age 85, right hemisphere 2.2
2566 Female, age 72, unknown 1.8
2778 Female, age 91, both hemispheres 1.8
1818 Male, age 74, unknown 1.7
2287 Male, age 75, right hemisphere 1.7
2483 Female, age 94, right hemisphere 1.7
2037 Male, age 80, right hemisphere 1.6
Nucleus accumbens
nTPM: 1.7
2391 Female, age 94, left hemisphere 2.1
2824 Male, age 61, right hemisphere 1.8
1806 Female, age 85, left hemisphere 1.7
1856 Female, age 91, right hemisphere 1.7
2732 Male, age 80, right hemisphere 1.7
1783 Male, age 74, unknown 1.6
2286 Male, age 75, left hemisphere 1.6
2698 Female, age 72, unknown 1.6
Nucleus basalis of Meynert
nTPM: 1.6
2393 Male, age 80, right hemisphere 1.7
2484 Female, age 94, left hemisphere 1.7
2821 Male, age 75, both hemispheres 1.6
2569 Male, age 61, both hemispheres 1.3
Nucleus of the diagonal band
nTPM: 1.7
2195 Female, age 85, both hemispheres 2.0
2029 Male, age 61, right hemisphere 1.7
2775 Male, age 80, right hemisphere 1.7
1979 Male, age 74, unknown 1.6
1812 Female, age 91, both hemispheres 1.4
Olfactory tubercle
nTPM: 1.7
1998 Female, age 91, both hemispheres 2.0
2856 Male, age 75, right hemisphere 1.7
1846 Male, age 80, right hemisphere 1.5
2487 Female, age 94, left hemisphere 1.5
Putamen
nTPM: 1.8
2466 Female, age 79, unknown 2.0
1829 Male, age 74, unknown 1.9
1838 Male, age 80, right hemisphere 1.9
2482 Female, age 94, left hemisphere 1.8
2489 Female, age 72, unknown 1.8
1937 Female, age 91, right hemisphere 1.5
2647 Male, age 75, left hemisphere 1.5
Septal nuclei
nTPM: 1.7
2031 Female, age 72, unknown 2.0
1960 Male, age 74, unknown 1.8
2009 Female, age 91, both hemispheres 1.8
2059 Female, age 85, both hemispheres 1.7
2629 Female, age 94, right hemisphere 1.7
2199 Male, age 80, right hemisphere 1.6
2394 Male, age 61, left hemisphere 1.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.3
Samples: 246

Max nTPM: 7.5
Min nTPM: 2.2
Std nTPM: 0.8
Median nTPM: 4.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 7.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 7.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 6.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 6.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 6.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 6.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 6.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 6.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 6.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 6.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 6.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.4
Samples: 246

Max nTPM: 7.8
Min nTPM: 2.1
Std nTPM: 0.8
Median nTPM: 4.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 7.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 7.4
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 7.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 7.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 6.3
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 6.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 6.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 6.0
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 6.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 6.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 6.0
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Brain - Putamen (basal ganglia)
Average nTPM: 4.5
Samples: 205

Max nTPM: 8.4
Min nTPM: 1.8
Std nTPM: 0.9
Median nTPM: 4.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 8.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 6.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 6.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 6.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 6.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 6.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 6.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 6.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 6.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 6.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 6.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.3
FF:10164-103B2 76 years, female 7.3
Globus pallidus
Scaled Tags Per Million: 6.9
FF:10161-103A8 76 years, female 7.5
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 7.1
FF:10037-101F1 23-56 years, mixed 7.1
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 7.2
Sample C Male 8.2
Sample D Male 6.8
Putamen
nTPM: 6.9
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.3
Sample A Female 6.7
Sample B Female 5.3
Sample C Male 8.8
Sample D Male 6.8
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.2
Sample A Female 8.8
Sample B Female 6.2
Sample C Male 6.8
Sample D Male 7.0
Ventral pallidum
nTPM: 6.5
Samples: 4

Max nTPM: 6.7
Min nTPM: 6.4
Sample A Female 6.5
Sample B Female 6.7
Sample C Male 6.4
Sample D Male 6.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.1
Sample A Male 2.3
Sample B Male 2.8
Sample C Female 3.6
Sample D Female 2.1
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.7
Sample A Male 2.1
Sample B Male 2.0
Sample C Female 1.7
Sample D Female 2.5
Ventral forebrain
nTPM: 2.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.8
Sample A Male 3.1
Sample B Male 2.7
Sample C Female 2.5
Sample D Female 1.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
69407236 Antisense, RP_050414_01_B11, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 1.1
69407236 Antisense, RP_050414_01_B11, Mouse strain C57BL/6J (56 days, male) 1.1

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