BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:20.6 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:47.7 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA041884
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.5
1857 Female, age 85, left hemisphere 13.5
1854 Male, age 80, left hemisphere 10.9
2481 Female, age 94, left hemisphere 10.6
2290 Female, age 72, unknown 10.5
2288 Male, age 75, left hemisphere 8.2
2289 Male, age 61, right hemisphere 8.2
2846 Female, age 79, unknown 7.7
1781 Male, age 74, unknown 6.8
Claustrum
nTPM: 4.5
2568 Male, age 61, both hemispheres 5.4
2196 Female, age 79, unknown 5.3
2645 Female, age 72, unknown 5.2
2198 Male, age 80, both hemispheres 5.1
2284 Female, age 91, both hemispheres 4.5
2491 Male, age 75, both hemispheres 4.4
2392 Female, age 94, both hemispheres 3.9
2292 Female, age 85, both hemispheres 3.5
1956 Male, age 74, unknown 3.3
Globus pallidus, externus
nTPM: 9.7
2772 Female, age 79, unknown 12.1
1996 Male, age 80, right hemisphere 11.2
2646 Male, age 61, right hemisphere 10.0
2567 Female, age 72, unknown 8.8
2395 Male, age 75, both hemispheres 6.5
Globus pallidus, internus
nTPM: 8.1
1818 Male, age 74, unknown 11.5
2037 Male, age 80, right hemisphere 10.3
2483 Female, age 94, right hemisphere 9.8
2287 Male, age 75, right hemisphere 9.2
2111 Female, age 85, right hemisphere 5.7
2566 Female, age 72, unknown 5.7
2778 Female, age 91, both hemispheres 4.9
Nucleus accumbens
nTPM: 7.6
1806 Female, age 85, left hemisphere 12.4
2286 Male, age 75, left hemisphere 9.7
1783 Male, age 74, unknown 7.3
2698 Female, age 72, unknown 6.9
1856 Female, age 91, right hemisphere 6.6
2824 Male, age 61, right hemisphere 6.6
2732 Male, age 80, right hemisphere 5.9
2391 Female, age 94, left hemisphere 5.3
Nucleus basalis of Meynert
nTPM: 7.6
2569 Male, age 61, both hemispheres 11.6
2393 Male, age 80, right hemisphere 6.8
2484 Female, age 94, left hemisphere 6.8
2821 Male, age 75, both hemispheres 5.3
Nucleus of the diagonal band
nTPM: 6.8
1979 Male, age 74, unknown 9.5
2195 Female, age 85, both hemispheres 7.0
2775 Male, age 80, right hemisphere 6.7
2029 Male, age 61, right hemisphere 5.5
1812 Female, age 91, both hemispheres 5.4
Olfactory tubercle
nTPM: 6.3
2856 Male, age 75, right hemisphere 7.6
1846 Male, age 80, right hemisphere 6.8
1998 Female, age 91, both hemispheres 5.6
2487 Female, age 94, left hemisphere 5.3
Putamen
nTPM: 7.4
1838 Male, age 80, right hemisphere 9.0
2482 Female, age 94, left hemisphere 8.3
2466 Female, age 79, unknown 7.9
2489 Female, age 72, unknown 7.4
2647 Male, age 75, left hemisphere 6.7
1829 Male, age 74, unknown 6.4
1937 Female, age 91, right hemisphere 6.0
Septal nuclei
nTPM: 6.9
2199 Male, age 80, right hemisphere 10.1
2059 Female, age 85, both hemispheres 8.8
2394 Male, age 61, left hemisphere 7.8
1960 Male, age 74, unknown 6.3
2009 Female, age 91, both hemispheres 5.4
2031 Female, age 72, unknown 5.4
2629 Female, age 94, right hemisphere 4.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.6
Samples: 246

Max nTPM: 65.3
Min nTPM: 0.9
Std nTPM: 11.1
Median nTPM: 19.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 65.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 61.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 51.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 49.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 48.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 46.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 44.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 43.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 42.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.0
Samples: 246

Max nTPM: 71.1
Min nTPM: 0.4
Std nTPM: 9.6
Median nTPM: 15.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 71.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 52.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 45.8
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 45.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 44.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 41.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 39.3
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 39.2
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 38.1
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 36.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 35.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 17.8
Samples: 205

Max nTPM: 57.3
Min nTPM: 1.6
Std nTPM: 10.0
Median nTPM: 16.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 57.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 51.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 50.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 42.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 40.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 39.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 38.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 37.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 36.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 35.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 35.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.8
FF:10164-103B2 76 years, female 10.8
Globus pallidus
Scaled Tags Per Million: 8.9
FF:10175-103C4 60 years, female 13.4
FF:10161-103A8 76 years, female 4.5
Nucleus accumbens
Scaled Tags Per Million: 18.2
FF:10037-101F1 23-56 years, mixed 18.2
Putamen
Scaled Tags Per Million: 21.9
FF:10176-103C5 60 years, female 21.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.9
Pig sample Sample description nTPM
Caudate
nTPM: 14.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 15.5
Sample C Male 17.6
Sample D Male 14.0
Putamen
nTPM: 15.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 12.0
Sample A Female 20.6
Sample B Female 12.0
Sample C Male 18.2
Sample D Male 12.6
Septum
nTPM: 10.5
Samples: 4

Max nTPM: 14.2
Min nTPM: 5.9
Sample A Female 13.0
Sample B Female 8.8
Sample C Male 14.2
Sample D Male 5.9
Ventral pallidum
nTPM: 13.6
Samples: 4

Max nTPM: 20.7
Min nTPM: 10.4
Sample A Female 12.5
Sample B Female 10.4
Sample C Male 20.7
Sample D Male 10.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 32.9
Samples: 4

Max nTPM: 37.7
Min nTPM: 30.5
Sample A Male 37.7
Sample B Male 32.4
Sample C Female 30.5
Sample D Female 31.1
Septum
nTPM: 47.7
Samples: 4

Max nTPM: 57.7
Min nTPM: 39.2
Sample A Male 46.2
Sample B Male 57.7
Sample C Female 47.5
Sample D Female 39.2
Ventral forebrain
nTPM: 38.5
Samples: 4

Max nTPM: 44.4
Min nTPM: 33.9
Sample A Male 33.9
Sample B Male 44.4
Sample C Female 40.7
Sample D Female 35.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69874042 Antisense, RP_050512_02_E08, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
69874042 Antisense, RP_050512_02_E08, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.