MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.8 nTPM
HPA:25.8 nTPM
GTEx:41.3 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:9.9 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2586 Male, age 75, left hemisphere 46.7
2828 Female, age 72, unknown 32.8
1827 Male, age 72, unknown 24.5
2666 Male, age 74, left hemisphere 24.4
2219 Male, age 76, both hemispheres 24.3
2019 Male, age 18, unknown 20.9
2411 Female, age 72, unknown 16.9
1830 Male, age 51, unknown 14.0
1833 Male, age 53, unknown 14.0
1870 Female, age 42, unknown 13.2
Dorsal raphe nucleus
nTPM: 17.4
2047 Male, age 72, unknown 21.5
2298 Female, age 72, unknown 19.3
1828 Male, age 53, unknown 18.7
2016 Female, age 72, unknown 13.8
2750 Male, age 76, both hemispheres 13.7
Inferior colliculus
nTPM: 21.2
2097 Female, age 72, unknown 23.0
1890 Male, age 53, unknown 22.3
1848 Female, age 42, unknown 22.1
2849 Male, age 72, unknown 17.4
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Pedunculopontine tegmental nucleus
nTPM: 12.2
1921 Female, age 85, both hemispheres 17.1
2334 Male, age 80, both hemispheres 14.9
2338 Male, age 61, both hemispheres 4.5
Periaquaductal grey, anterior
nTPM: 25.8
2502 Female, age 75, unknown 29.7
1795 Male, age 51, unknown 24.8
1947 Male, age 18, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 15.9
1840 Male, age 53, unknown 20.7
2464 Female, age 72, unknown 18.3
1831 Male, age 72, unknown 16.5
2850 Male, age 76, both hemispheres 8.2
Periaquaductal grey, lateral
nTPM: 12.7
2053 Male, age 18, unknown 17.0
2272 Male, age 74, both hemispheres 10.7
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 22.7
1816 Male, age 51, unknown 37.0
2007 Male, age 72, unknown 34.2
1817 Female, age 42, unknown 30.3
1944 Female, age 72, unknown 30.2
1815 Male, age 53, unknown 27.5
2407 Male, age 75, both hemispheres 20.2
2667 Female, age 75, unknown 19.2
2825 Male, age 18, unknown 14.4
2224 Female, age 72, unknown 14.1
2316 Male, age 76, right hemisphere 11.3
2273 Male, age 74, both hemispheres 10.9
Red nucleus
nTPM: 16.1
2584 Male, age 75, left hemisphere 24.9
2588 Male, age 74, left hemisphere 22.5
2785 Male, age 18, unknown 22.1
2769 Male, age 72, unknown 17.1
2503 Female, age 72, unknown 17.0
2227 Male, age 72, unknown 16.0
1954 Female, age 42, unknown 15.5
2725 Female, age 75, unknown 13.9
1904 Male, age 53, unknown 12.9
1821 Female, age 72, unknown 12.8
1865 Male, age 51, unknown 10.3
2823 Male, age 76, right hemisphere 8.3
Substantia nigra
nTPM: 21.5
2665 Male, age 74, both hemispheres 33.5
1916 Female, age 42, unknown 31.2
1889 Female, age 72, unknown 26.2
2583 Male, age 75, right hemisphere 24.6
1851 Male, age 51, unknown 23.5
2590 Female, age 75, unknown 21.7
2699 Male, age 18, unknown 17.9
1941 Male, age 53, unknown 17.1
2241 Male, age 72, unknown 11.6
2409 Female, age 72, unknown 7.9
Superior colliculus
nTPM: 22.6
2664 Male, age 75, both hemispheres 39.7
2087 Female, age 72, unknown 30.1
1796 Male, age 53, unknown 26.9
2261 Male, age 18, unknown 23.7
2668 Female, age 75, unknown 21.8
1839 Male, age 51, unknown 21.4
2587 Male, age 74, left hemisphere 17.6
1995 Male, age 72, unknown 15.9
1895 Male, age 76, right hemisphere 14.8
1913 Female, age 42, unknown 13.7
Ventral tegmental area
nTPM: 20.1
1915 Female, age 42, unknown 24.7
2410 Female, age 72, unknown 23.7
1942 Male, age 51, unknown 21.6
2218 Male, age 76, both hemispheres 19.3
2021 Male, age 53, unknown 17.4
2223 Female, age 72, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.3
Samples: 139

Max nTPM: 103.3
Min nTPM: 6.1
Std nTPM: 16.4
Median nTPM: 41.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 103.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 86.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 78.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 68.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 68.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 67.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 67.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 65.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 65.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 64.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.3
FF:10158-103A5 76 years, female 15.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 31.6
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 11.6
Sample C Male 31.6
Sample D Male 21.9
Periaqueductal gray
nTPM: 12.0
Samples: 3

Max nTPM: 15.5
Min nTPM: 9.8
Sample B Female 10.8
Sample C Male 15.5
Sample D Male 9.8
Substantia nigra
nTPM: 14.2
Samples: 4

Max nTPM: 18.2
Min nTPM: 10.7
Sample A Female 16.7
Sample B Female 11.2
Sample C Male 18.2
Sample D Male 10.7
Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 25.4
Min nTPM: 19.0
Sample A Female 20.2
Sample B Female 19.0
Sample C Male 25.4
Sample D Male 19.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.9
Sample A Male 11.3
Sample B Male 8.9
Sample C Female 9.0
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
71022633 Antisense, RP_050713_04_H03, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.