MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:65.4 nTPM
HPA:65.4 nTPM
GTEx:81.8 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:52.2 nTPM
Mouse:162.7 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2666 Male, age 74, left hemisphere 67.4
2586 Male, age 75, left hemisphere 66.1
1827 Male, age 72, unknown 60.2
1870 Female, age 42, unknown 59.1
2411 Female, age 72, unknown 58.7
2219 Male, age 76, both hemispheres 58.6
1833 Male, age 53, unknown 56.9
1830 Male, age 51, unknown 55.8
2828 Female, age 72, unknown 55.3
2019 Male, age 18, unknown 54.2
Dorsal raphe nucleus
nTPM: 58.4
2750 Male, age 76, both hemispheres 61.3
1828 Male, age 53, unknown 59.8
2047 Male, age 72, unknown 59.3
2298 Female, age 72, unknown 56.2
2016 Female, age 72, unknown 55.3
Inferior colliculus
nTPM: 60.4
2849 Male, age 72, unknown 66.8
1848 Female, age 42, unknown 60.8
1890 Male, age 53, unknown 57.9
2097 Female, age 72, unknown 56.2
Median raphe nucleus
nTPM: 65.4
2220 Male, age 76, midline 65.4
Pedunculopontine tegmental nucleus
nTPM: 61.8
2334 Male, age 80, both hemispheres 64.4
1921 Female, age 85, both hemispheres 61.5
2338 Male, age 61, both hemispheres 59.6
Periaquaductal grey, anterior
nTPM: 59.6
1947 Male, age 18, unknown 64.5
2502 Female, age 75, unknown 57.9
1795 Male, age 51, unknown 56.5
Periaquaductal grey, dorsal
nTPM: 55.6
1840 Male, age 53, unknown 61.0
2464 Female, age 72, unknown 55.6
2850 Male, age 76, both hemispheres 55.6
1831 Male, age 72, unknown 50.2
Periaquaductal grey, lateral
nTPM: 52.2
2140 Male, age 76, both hemispheres 54.7
2053 Male, age 18, unknown 52.6
2272 Male, age 74, both hemispheres 49.2
Pretectal area
nTPM: 56.4
2007 Male, age 72, unknown 63.9
1816 Male, age 51, unknown 60.8
1817 Female, age 42, unknown 59.0
2825 Male, age 18, unknown 58.2
1815 Male, age 53, unknown 57.3
1944 Female, age 72, unknown 56.8
2224 Female, age 72, unknown 55.9
2316 Male, age 76, right hemisphere 54.3
2407 Male, age 75, both hemispheres 53.6
2667 Female, age 75, unknown 52.6
2273 Male, age 74, both hemispheres 48.5
Red nucleus
nTPM: 59.8
2725 Female, age 75, unknown 67.1
2588 Male, age 74, left hemisphere 66.8
2584 Male, age 75, left hemisphere 62.2
2503 Female, age 72, unknown 61.3
2227 Male, age 72, unknown 61.0
2769 Male, age 72, unknown 61.0
1821 Female, age 72, unknown 59.0
1954 Female, age 42, unknown 58.4
2785 Male, age 18, unknown 57.0
1865 Male, age 51, unknown 55.9
1904 Male, age 53, unknown 55.0
2823 Male, age 76, right hemisphere 53.5
Substantia nigra
nTPM: 59.6
1916 Female, age 42, unknown 67.7
1941 Male, age 53, unknown 64.4
1889 Female, age 72, unknown 61.6
2665 Male, age 74, both hemispheres 61.3
1851 Male, age 51, unknown 59.4
2241 Male, age 72, unknown 58.8
2583 Male, age 75, right hemisphere 57.6
2699 Male, age 18, unknown 56.6
2590 Female, age 75, unknown 54.8
2409 Female, age 72, unknown 54.3
Superior colliculus
nTPM: 55.4
1895 Male, age 76, right hemisphere 60.2
2668 Female, age 75, unknown 58.9
1839 Male, age 51, unknown 58.7
2261 Male, age 18, unknown 57.9
1796 Male, age 53, unknown 57.2
2587 Male, age 74, left hemisphere 56.9
2664 Male, age 75, both hemispheres 54.2
2087 Female, age 72, unknown 52.3
1913 Female, age 42, unknown 50.5
1995 Male, age 72, unknown 47.1
Ventral tegmental area
nTPM: 58.4
1915 Female, age 42, unknown 61.5
2218 Male, age 76, both hemispheres 60.4
1942 Male, age 51, unknown 59.7
2223 Female, age 72, unknown 59.6
2410 Female, age 72, unknown 56.6
2021 Male, age 53, unknown 52.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.8
Samples: 139

Max nTPM: 167.6
Min nTPM: 34.0
Std nTPM: 21.5
Median nTPM: 79.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 167.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 156.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 142.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 135.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 126.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 119.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 115.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 114.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 113.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.9
FF:10158-103A5 76 years, female 45.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.2
Pig sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 58.1
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 35.1
Sample C Male 58.1
Sample D Male 44.8
Periaqueductal gray
nTPM: 33.5
Samples: 3

Max nTPM: 39.7
Min nTPM: 27.9
Sample B Female 32.9
Sample C Male 39.7
Sample D Male 27.9
Substantia nigra
nTPM: 39.8
Samples: 4

Max nTPM: 57.5
Min nTPM: 19.9
Sample A Female 57.5
Sample B Female 31.4
Sample C Male 50.5
Sample D Male 19.9
Superior colliculi
nTPM: 52.3
Samples: 4

Max nTPM: 67.4
Min nTPM: 32.6
Sample A Female 59.3
Sample B Female 32.6
Sample C Male 67.4
Sample D Male 49.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 162.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.8
Samples: 4

Max nTPM: 167.7
Min nTPM: 159.8
Sample A Male 159.8
Sample B Male 163.5
Sample C Female 167.7
Sample D Female 160.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
69734893 Antisense, RP_050503_01_E12, Mouse strain C57BL/6J (56 days, male) 15.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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