BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:10.5 nTPM
FANTOM5:175.3 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:7.8 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.2
2288 Male, age 75, left hemisphere 13.9
2846 Female, age 79, unknown 9.8
1854 Male, age 80, left hemisphere 9.7
2290 Female, age 72, unknown 9.2
1781 Male, age 74, unknown 8.3
2481 Female, age 94, left hemisphere 7.9
2289 Male, age 61, right hemisphere 7.6
1857 Female, age 85, left hemisphere 6.9
Claustrum
nTPM: 12.8
2292 Female, age 85, both hemispheres 18.6
1956 Male, age 74, unknown 18.0
2392 Female, age 94, both hemispheres 13.7
2196 Female, age 79, unknown 13.1
2491 Male, age 75, both hemispheres 11.7
2568 Male, age 61, both hemispheres 11.1
2198 Male, age 80, both hemispheres 10.8
2645 Female, age 72, unknown 9.3
2284 Female, age 91, both hemispheres 9.2
Globus pallidus, externus
nTPM: 21.1
1996 Male, age 80, right hemisphere 25.9
2772 Female, age 79, unknown 21.2
2395 Male, age 75, both hemispheres 19.5
2567 Female, age 72, unknown 19.5
2646 Male, age 61, right hemisphere 19.4
Globus pallidus, internus
nTPM: 24.9
2111 Female, age 85, right hemisphere 34.7
2778 Female, age 91, both hemispheres 32.2
2287 Male, age 75, right hemisphere 25.0
1818 Male, age 74, unknown 23.1
2037 Male, age 80, right hemisphere 23.0
2566 Female, age 72, unknown 22.0
2483 Female, age 94, right hemisphere 14.5
Nucleus accumbens
nTPM: 11.8
2391 Female, age 94, left hemisphere 19.9
2698 Female, age 72, unknown 14.9
2286 Male, age 75, left hemisphere 12.8
2732 Male, age 80, right hemisphere 12.4
1806 Female, age 85, left hemisphere 10.0
2824 Male, age 61, right hemisphere 8.9
1783 Male, age 74, unknown 8.7
1856 Female, age 91, right hemisphere 6.5
Nucleus basalis of Meynert
nTPM: 13.9
2569 Male, age 61, both hemispheres 16.6
2821 Male, age 75, both hemispheres 15.8
2393 Male, age 80, right hemisphere 12.0
2484 Female, age 94, left hemisphere 11.1
Nucleus of the diagonal band
nTPM: 7.1
1812 Female, age 91, both hemispheres 9.5
2029 Male, age 61, right hemisphere 8.3
2775 Male, age 80, right hemisphere 6.2
2195 Female, age 85, both hemispheres 6.0
1979 Male, age 74, unknown 5.7
Olfactory tubercle
nTPM: 7.1
2856 Male, age 75, right hemisphere 8.0
1846 Male, age 80, right hemisphere 7.1
1998 Female, age 91, both hemispheres 7.0
2487 Female, age 94, left hemisphere 6.1
Putamen
nTPM: 10.9
2647 Male, age 75, left hemisphere 13.7
1829 Male, age 74, unknown 13.2
2482 Female, age 94, left hemisphere 11.5
1937 Female, age 91, right hemisphere 11.4
2489 Female, age 72, unknown 11.0
2466 Female, age 79, unknown 8.2
1838 Male, age 80, right hemisphere 7.3
Septal nuclei
nTPM: 8.4
2394 Male, age 61, left hemisphere 14.6
2629 Female, age 94, right hemisphere 9.6
2199 Male, age 80, right hemisphere 9.0
2059 Female, age 85, both hemispheres 7.3
2009 Female, age 91, both hemispheres 6.9
2031 Female, age 72, unknown 6.9
1960 Male, age 74, unknown 4.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.4
Samples: 246

Max nTPM: 22.7
Min nTPM: 3.6
Std nTPM: 3.3
Median nTPM: 7.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 22.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 22.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 21.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 18.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 18.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 17.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 16.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 16.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 15.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 15.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 49.8
Min nTPM: 2.5
Std nTPM: 4.6
Median nTPM: 5.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 49.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 30.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 30.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 27.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 21.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 18.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 18.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 15.8
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 15.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 15.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 14.2
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Brain - Putamen (basal ganglia)
Average nTPM: 10.5
Samples: 205

Max nTPM: 43.2
Min nTPM: 3.8
Std nTPM: 4.3
Median nTPM: 9.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 43.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 30.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 21.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 20.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 19.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 18.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 18.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 17.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 17.8
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 17.7
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 17.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.5
FF:10164-103B2 76 years, female 32.5
Globus pallidus
Scaled Tags Per Million: 175.3
FF:10175-103C4 60 years, female 210.7
FF:10161-103A8 76 years, female 139.8
Nucleus accumbens
Scaled Tags Per Million: 75.7
FF:10037-101F1 23-56 years, mixed 75.7
Putamen
Scaled Tags Per Million: 42.1
FF:10176-103C5 60 years, female 42.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Caudate
nTPM: 8.0
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.8
Sample A Female 7.3
Sample B Female 6.8
Sample C Male 9.1
Sample D Male 8.7
Putamen
nTPM: 20.7
Samples: 4

Max nTPM: 28.6
Min nTPM: 11.4
Sample A Female 28.6
Sample B Female 11.4
Sample C Male 15.9
Sample D Male 26.7
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 21.6
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 11.3
Sample C Male 13.3
Sample D Male 21.6
Ventral pallidum
nTPM: 18.2
Samples: 4

Max nTPM: 28.5
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 15.5
Sample C Male 21.6
Sample D Male 28.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.9
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.1
Sample A Male 8.0
Sample B Male 6.1
Sample C Female 6.5
Sample D Female 7.1
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 10.9
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 7.9
Sample C Female 7.7
Sample D Female 10.9
Ventral forebrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 4.9
Sample C Female 4.7
Sample D Female 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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