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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:102.9 nTPM
HPA:102.9 nTPM
GTEx:91.7 nTPM
FANTOM5:225.4 Scaled Tags Per Million
Pig:65.5 nTPM
Mouse:159.5 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 102.9
Sample id Sample description nTPM
Amygdala
nTPM: 98.2
2814 Male, age 76, right hemisphere 109.4
2517 Female, age 94, left hemisphere 98.8
2514 Male, age 75, right hemisphere 95.9
1987 Female, age 91, left hemisphere 93.8
2695 Female, age 67, right hemisphere 92.9
Basal amygdala
nTPM: 100.8
2685 Female, age 94, left hemisphere 111.0
2243 Female, age 91, right hemisphere 106.8
2110 Male, age 80, left hemisphere 103.1
2609 Male, age 75, right hemisphere 99.9
1955 Male, age 76, both hemispheres 98.4
2827 Female, age 67, right hemisphere 85.5
Central amygdala
nTPM: 97.3
1905 Male, age 76, both hemispheres 106.3
2239 Male, age 80, left hemisphere 98.7
2515 Male, age 75, right hemisphere 96.5
2826 Female, age 94, left hemisphere 94.1
2701 Female, age 91, right hemisphere 91.0
Corticomedial amygdala
nTPM: 100.9
2242 Female, age 91, right hemisphere 109.9
2829 Male, age 80, left hemisphere 106.3
2429 Female, age 94, left hemisphere 103.4
2428 Male, age 75, right hemisphere 100.1
2240 Male, age 76, both hemispheres 96.8
2535 Female, age 67, right hemisphere 88.9
Lateral amygdala
nTPM: 96.8
1883 Male, age 76, both hemispheres 105.8
2534 Female, age 94, left hemisphere 102.6
2516 Male, age 75, right hemisphere 101.2
2255 Female, age 91, right hemisphere 94.3
2256 Male, age 80, left hemisphere 92.1
2830 Female, age 67, right hemisphere 84.6
Stria terminalis, bed nucleus
nTPM: 102.9
1974 Female, age 91, both hemispheres 107.5
2486 Female, age 94, both hemispheres 102.9
2201 Male, age 74, unknown 98.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 91.7
Samples: 152

Max nTPM: 141.2
Min nTPM: 42.5
Std nTPM: 17.1
Median nTPM: 91.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 141.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 128.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 124.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 120.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 119.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 117.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 117.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 116.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 115.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 115.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 115.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 113.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 112.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 110.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 109.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 108.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 108.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 107.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 107.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 106.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 105.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 105.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 103.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 103.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 103.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 103.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 102.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 101.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 101.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 101.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 101.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 100.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 100.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 99.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 99.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 99.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 99.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 98.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 97.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 97.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 97.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 97.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 97.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 97.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 96.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 94.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 94.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 94.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 93.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 92.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 92.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 92.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 91.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 91.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 91.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 91.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 90.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 90.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 89.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 89.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 89.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 88.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 88.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 88.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 87.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 85.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 85.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 85.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 85.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 85.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 84.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 84.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 83.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 83.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 83.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 80.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 79.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 79.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 79.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 79.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 79.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 78.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 77.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 77.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 77.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 76.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 76.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 75.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 75.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 75.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 75.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 74.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 72.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 72.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 71.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 71.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 68.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 67.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 63.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 60.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 59.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 57.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 51.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 51.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 42.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 225.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 225.4
FF:10151-102I7 76 years, female 225.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.5
Pig sample Sample description nTPM
Amygdala
nTPM: 65.5
Samples: 4

Max nTPM: 86.1
Min nTPM: 51.2
Sample A Female 86.1
Sample B Female 51.2
Sample C Male 59.7
Sample D Male 64.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 159.5
Samples: 4

Max nTPM: 174.6
Min nTPM: 149.1
Sample A Male 174.6
Sample B Male 156.4
Sample C Female 149.1
Sample D Female 157.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
70194486 Antisense, RP_050517_01_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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