MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:104.2 nTPM
HPA:104.2 nTPM
GTEx:85.3 nTPM
FANTOM5:193.3 Scaled Tags Per Million
Pig:98.4 nTPM
Mouse:162.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.7
1827 Male, age 72, unknown 109.6
2411 Female, age 72, unknown 104.3
2828 Female, age 72, unknown 103.2
2019 Male, age 18, unknown 98.5
2666 Male, age 74, left hemisphere 98.2
2219 Male, age 76, both hemispheres 94.3
1833 Male, age 53, unknown 93.7
1870 Female, age 42, unknown 93.1
2586 Male, age 75, left hemisphere 91.8
1830 Male, age 51, unknown 90.0
Dorsal raphe nucleus
nTPM: 93.3
2298 Female, age 72, unknown 99.3
2750 Male, age 76, both hemispheres 94.5
2047 Male, age 72, unknown 92.4
1828 Male, age 53, unknown 90.9
2016 Female, age 72, unknown 89.5
Inferior colliculus
nTPM: 91.7
1848 Female, age 42, unknown 92.8
2097 Female, age 72, unknown 92.1
1890 Male, age 53, unknown 91.3
2849 Male, age 72, unknown 90.5
Median raphe nucleus
nTPM: 92.8
2220 Male, age 76, midline 92.8
Pedunculopontine tegmental nucleus
nTPM: 97.7
2338 Male, age 61, both hemispheres 101.8
2334 Male, age 80, both hemispheres 98.1
1921 Female, age 85, both hemispheres 93.0
Periaquaductal grey, anterior
nTPM: 98.7
1795 Male, age 51, unknown 105.1
1947 Male, age 18, unknown 100.8
2502 Female, age 75, unknown 90.2
Periaquaductal grey, dorsal
nTPM: 91.6
2850 Male, age 76, both hemispheres 94.9
1831 Male, age 72, unknown 94.2
2464 Female, age 72, unknown 90.4
1840 Male, age 53, unknown 86.9
Periaquaductal grey, lateral
nTPM: 102.0
2272 Male, age 74, both hemispheres 114.7
2053 Male, age 18, unknown 96.6
2140 Male, age 76, both hemispheres 94.8
Pretectal area
nTPM: 104.2
1816 Male, age 51, unknown 119.1
2007 Male, age 72, unknown 111.5
2667 Female, age 75, unknown 111.5
1944 Female, age 72, unknown 110.8
1817 Female, age 42, unknown 107.8
2273 Male, age 74, both hemispheres 107.5
1815 Male, age 53, unknown 103.1
2407 Male, age 75, both hemispheres 98.5
2224 Female, age 72, unknown 95.8
2825 Male, age 18, unknown 91.8
2316 Male, age 76, right hemisphere 88.8
Red nucleus
nTPM: 95.5
2785 Male, age 18, unknown 100.7
1821 Female, age 72, unknown 99.3
2588 Male, age 74, left hemisphere 98.0
2503 Female, age 72, unknown 97.8
2725 Female, age 75, unknown 97.5
1904 Male, age 53, unknown 95.3
1954 Female, age 42, unknown 94.4
2823 Male, age 76, right hemisphere 94.4
2769 Male, age 72, unknown 93.1
1865 Male, age 51, unknown 92.3
2227 Male, age 72, unknown 92.2
2584 Male, age 75, left hemisphere 90.9
Substantia nigra
nTPM: 99.1
1916 Female, age 42, unknown 109.7
1941 Male, age 53, unknown 106.4
1851 Male, age 51, unknown 104.2
1889 Female, age 72, unknown 101.4
2583 Male, age 75, right hemisphere 98.9
2590 Female, age 75, unknown 97.1
2699 Male, age 18, unknown 95.3
2409 Female, age 72, unknown 93.5
2665 Male, age 74, both hemispheres 93.0
2241 Male, age 72, unknown 91.5
Superior colliculus
nTPM: 98.9
2261 Male, age 18, unknown 111.5
1796 Male, age 53, unknown 109.6
2087 Female, age 72, unknown 105.3
2668 Female, age 75, unknown 100.1
1913 Female, age 42, unknown 98.4
2587 Male, age 74, left hemisphere 96.2
1995 Male, age 72, unknown 93.4
1895 Male, age 76, right hemisphere 93.2
2664 Male, age 75, both hemispheres 91.2
1839 Male, age 51, unknown 90.3
Ventral tegmental area
nTPM: 97.0
2410 Female, age 72, unknown 107.5
2218 Male, age 76, both hemispheres 99.4
1915 Female, age 42, unknown 98.8
2021 Male, age 53, unknown 92.3
1942 Male, age 51, unknown 92.2
2223 Female, age 72, unknown 91.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.3
Samples: 139

Max nTPM: 135.1
Min nTPM: 53.4
Std nTPM: 14.9
Median nTPM: 82.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 135.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 129.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 120.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 119.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 118.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 115.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 112.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 112.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 108.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 108.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 107.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 193.3
FF:10158-103A5 76 years, female 193.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.4
Pig sample Sample description nTPM
Midbrain
nTPM: 98.4
Samples: 4

Max nTPM: 115.7
Min nTPM: 76.2
Sample A Female 115.7
Sample B Female 76.2
Sample C Male 113.0
Sample D Male 88.7
Periaqueductal gray
nTPM: 79.9
Samples: 3

Max nTPM: 91.2
Min nTPM: 73.3
Sample B Female 73.3
Sample C Male 91.2
Sample D Male 75.1
Substantia nigra
nTPM: 98.3
Samples: 4

Max nTPM: 117.1
Min nTPM: 79.0
Sample A Female 114.3
Sample B Female 79.0
Sample C Male 117.1
Sample D Male 82.9
Superior colliculi
nTPM: 96.7
Samples: 4

Max nTPM: 102.2
Min nTPM: 88.9
Sample A Female 102.2
Sample B Female 88.9
Sample C Male 98.0
Sample D Male 97.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 162.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.1
Samples: 4

Max nTPM: 165.8
Min nTPM: 159.5
Sample A Male 159.5
Sample B Male 162.7
Sample C Female 165.8
Sample D Female 160.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70194486 Antisense, RP_050517_01_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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