MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9001.4 nTPM
HPA:9001.4 nTPM
GTEx:7680.7 nTPM
FANTOM5:5137.6 Scaled Tags Per Million
Pig:4815.5 nTPM
Mouse:243.7 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9001.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5193.9
2828 Female, age 72, unknown 8230.2
2666 Male, age 74, left hemisphere 6340.0
1870 Female, age 42, unknown 5751.7
1827 Male, age 72, unknown 5738.2
2586 Male, age 75, left hemisphere 5664.6
2411 Female, age 72, unknown 5159.4
1833 Male, age 53, unknown 4465.4
1830 Male, age 51, unknown 4236.1
2219 Male, age 76, both hemispheres 3329.0
2019 Male, age 18, unknown 3024.2
Dorsal raphe nucleus
nTPM: 7123.5
2016 Female, age 72, unknown 9906.5
2298 Female, age 72, unknown 7411.6
2047 Male, age 72, unknown 7163.9
1828 Male, age 53, unknown 7037.7
2750 Male, age 76, both hemispheres 4097.9
Inferior colliculus
nTPM: 6083.9
2849 Male, age 72, unknown 6765.8
2097 Female, age 72, unknown 6297.0
1848 Female, age 42, unknown 6146.3
1890 Male, age 53, unknown 5126.8
Median raphe nucleus
nTPM: 4624.9
2220 Male, age 76, midline 4624.9
Pedunculopontine tegmental nucleus
nTPM: 4458.1
2334 Male, age 80, both hemispheres 4568.9
1921 Female, age 85, both hemispheres 4506.4
2338 Male, age 61, both hemispheres 4299.1
Periaquaductal grey, anterior
nTPM: 6049.2
1795 Male, age 51, unknown 7525.5
2502 Female, age 75, unknown 5839.5
1947 Male, age 18, unknown 4782.4
Periaquaductal grey, dorsal
nTPM: 7977.3
1840 Male, age 53, unknown 8951.5
2850 Male, age 76, both hemispheres 8405.1
1831 Male, age 72, unknown 7724.3
2464 Female, age 72, unknown 6828.5
Periaquaductal grey, lateral
nTPM: 9001.4
2053 Male, age 18, unknown 13243.6
2140 Male, age 76, both hemispheres 8048.8
2272 Male, age 74, both hemispheres 5711.8
Pretectal area
nTPM: 5265.9
2825 Male, age 18, unknown 8213.4
2273 Male, age 74, both hemispheres 6805.8
2224 Female, age 72, unknown 5933.0
2316 Male, age 76, right hemisphere 5903.5
2407 Male, age 75, both hemispheres 5559.8
1944 Female, age 72, unknown 5222.8
2667 Female, age 75, unknown 4702.7
1815 Male, age 53, unknown 4606.3
1816 Male, age 51, unknown 4004.3
1817 Female, age 42, unknown 3681.2
2007 Male, age 72, unknown 3292.6
Red nucleus
nTPM: 4467.7
2503 Female, age 72, unknown 6365.7
2725 Female, age 75, unknown 5038.7
2769 Male, age 72, unknown 4949.8
2227 Male, age 72, unknown 4756.2
2823 Male, age 76, right hemisphere 4463.8
1821 Female, age 72, unknown 4422.1
2584 Male, age 75, left hemisphere 4121.4
1865 Male, age 51, unknown 4102.0
1954 Female, age 42, unknown 4088.4
2588 Male, age 74, left hemisphere 4071.7
1904 Male, age 53, unknown 3944.6
2785 Male, age 18, unknown 3288.0
Substantia nigra
nTPM: 4845.6
2699 Male, age 18, unknown 7753.1
1851 Male, age 51, unknown 5150.6
2590 Female, age 75, unknown 5104.6
2583 Male, age 75, right hemisphere 4776.1
1941 Male, age 53, unknown 4617.3
2665 Male, age 74, both hemispheres 4505.6
1889 Female, age 72, unknown 4350.7
1916 Female, age 42, unknown 4329.9
2409 Female, age 72, unknown 4289.6
2241 Male, age 72, unknown 3578.2
Superior colliculus
nTPM: 6007.1
1995 Male, age 72, unknown 8056.2
1913 Female, age 42, unknown 7573.0
1796 Male, age 53, unknown 6632.8
2664 Male, age 75, both hemispheres 6518.6
2587 Male, age 74, left hemisphere 6027.9
1839 Male, age 51, unknown 5816.3
2087 Female, age 72, unknown 5445.1
2668 Female, age 75, unknown 5000.1
2261 Male, age 18, unknown 4944.9
1895 Male, age 76, right hemisphere 4055.6
Ventral tegmental area
nTPM: 6160.8
2021 Male, age 53, unknown 7642.4
1915 Female, age 42, unknown 7432.2
1942 Male, age 51, unknown 7124.8
2410 Female, age 72, unknown 5097.7
2223 Female, age 72, unknown 5048.7
2218 Male, age 76, both hemispheres 4618.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7680.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7680.7
Samples: 139

Max nTPM: 25033.6
Min nTPM: 1631.4
Std nTPM: 4212.6
Median nTPM: 6919.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25033.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20125.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19632.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19440.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19014.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 16139.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 15348.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 14783.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 14769.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 14275.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 14194.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5137.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5137.6
FF:10158-103A5 76 years, female 5137.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 4815.5
Pig sample Sample description nTPM
Midbrain
nTPM: 4815.5
Samples: 4

Max nTPM: 11203.8
Min nTPM: 1676.8
Sample A Female 11203.8
Sample B Female 3639.9
Sample C Male 2741.4
Sample D Male 1676.8
Periaqueductal gray
nTPM: 4477.0
Samples: 3

Max nTPM: 5535.0
Min nTPM: 3938.1
Sample B Female 3938.1
Sample C Male 5535.0
Sample D Male 3957.9
Substantia nigra
nTPM: 4298.9
Samples: 4

Max nTPM: 4622.3
Min nTPM: 4006.2
Sample A Female 4622.3
Sample B Female 4006.2
Sample C Male 4329.2
Sample D Male 4237.9
Superior colliculi
nTPM: 2494.8
Samples: 4

Max nTPM: 3016.2
Min nTPM: 1436.6
Sample A Female 2567.2
Sample B Female 1436.6
Sample C Male 2959.3
Sample D Male 3016.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 243.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 243.7
Samples: 4

Max nTPM: 269.4
Min nTPM: 220.9
Sample A Male 269.4
Sample B Male 227.3
Sample C Female 220.9
Sample D Female 257.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
1358 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 2.8
79591671 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.7
1357 Antisense, RP_Baylor_253913, Mouse strain C57BL/6J (56 days, male) 2.6
79913385 Antisense, RP_071204_04_G06, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.