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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.4 nTPM
HPA:104.4 nTPM
GTEx:154.9 nTPM
FANTOM5:468.0 Scaled Tags Per Million
Pig:39.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 104.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 99.0
1981 Female, age 72, midline 112.3
2048 Male, age 55, midline 110.1
2816 Male, age 47, midline 94.4
2194 Female, age 79, both hemispheres 92.6
2565 Male, age 75, midline 85.7
Cervical spinal cord, dorsal horn
nTPM: 104.4
2296 Male, age 66, both hemispheres 117.5
2173 Female, age 72, unknown 116.4
2069 Male, age 47, both hemispheres 108.4
1877 Male, age 55, unknown 101.2
2297 Male, age 75, both hemispheres 91.6
2721 Male, age 90, both hemispheres 91.2
Cervical spinal cord, ventral horn
nTPM: 102.2
2098 Female, age 72, unknown 125.9
2480 Male, age 75, both hemispheres 103.5
2295 Male, age 66, both hemispheres 103.2
2809 Male, age 90, both hemispheres 102.0
2068 Male, age 55, unknown 90.5
2820 Female, age 79, both hemispheres 88.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 154.9
Samples: 159

Max nTPM: 270.3
Min nTPM: 78.3
Std nTPM: 33.5
Median nTPM: 153.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 270.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 247.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 243.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 235.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 224.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 216.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 215.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 215.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 214.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 212.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 209.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 208.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 207.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 202.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 194.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 193.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 189.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 188.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 188.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 187.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 187.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 187.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 187.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 184.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 184.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 183.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 181.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 181.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 180.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 180.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 180.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 180.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 180.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 179.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 179.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 179.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 178.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 178.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 178.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 177.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 176.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 175.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 175.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 174.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 174.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 173.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 172.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 170.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 170.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 169.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 169.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 169.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 168.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 168.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 167.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 166.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 166.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 165.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 165.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 165.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 165.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 164.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 164.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 161.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 161.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 161.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 160.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 160.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 158.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 157.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 157.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 156.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 156.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 156.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 154.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 154.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 154.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 153.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 153.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 153.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 153.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 152.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 151.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 151.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 151.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 150.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 150.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 150.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 148.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 147.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 146.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 146.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 146.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 146.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 146.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 145.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 144.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 144.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 143.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 143.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 142.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 140.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 140.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 138.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 138.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 137.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 137.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 136.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 135.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 133.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 133.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 130.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 128.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 127.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 127.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 127.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 127.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 126.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 126.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 124.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 124.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 123.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 123.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 122.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 122.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 121.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 121.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 121.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 121.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 117.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 116.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 114.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 111.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 111.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 109.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 109.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 107.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 106.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 105.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 98.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 98.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 97.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 90.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 87.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 85.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 78.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 468.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 468.0
FF:10159-103A6 76 years, female 532.8
FF:10181-103D1 60 years, female 403.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 37.2
Samples: 4

Max nTPM: 44.6
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 44.6
Sample C Male 42.1
Sample D Male 33.6
Ventral spinal cord
nTPM: 39.4
Samples: 4

Max nTPM: 44.7
Min nTPM: 32.2
Sample A Female 32.2
Sample B Female 38.7
Sample C Male 42.1
Sample D Male 44.7

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