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RPL27
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  • RPL27
PATHOLOGY STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
ANTIBODIES
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Dictionary
Stomach cancer
Human pathology
Stomach cancer
STOMACH CANCER - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

Read more
RPL27 is not prognostic in stomach cancer


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

Read more
: 318.86
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

Read more
: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average FPKM 317.6
Number of samples 354
Samples
Sample Description FPKM
TCGA-BR-8059-01A 72 years, male, white, stage:iii, dead, 439 days 1168.7
TCGA-D7-A74A-01A 61 years, female, white, stage:iiia, alive, 607 days 790.5
TCGA-BR-7717-01A 63 years, male, white, stage:iv, dead, 552 days 759.2
TCGA-HU-8238-01A 56 years, male, asian, alive, 46 days 732.4
TCGA-BR-8361-01A 71 years, female, white, stage:iiic, alive, 946 days 706.0
TCGA-CD-8534-01A 41 years, male, asian, stage:ii, alive, 367 days 641.0
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:iv, dead, 259 days 635.3
TCGA-IN-7808-01A 59 years, male, white, dead, 105 days 621.0
TCGA-IN-8462-01A 80 years, male, white, stage:iib, alive, 572 days 619.5
TCGA-HU-A4GT-01A 71 years, female, asian, stage:iia, alive, 198 days 611.9
TCGA-BR-6565-01A 67 years, male, white, stage:iib, dead, 279 days 607.8
TCGA-HU-A4G2-01A 46 years, male, asian, stage:iib, alive, 739 days 607.6
TCGA-B7-5818-01A 62 years, male, white, stage:ib, alive, 356 days 604.2
TCGA-CG-5724-01A 59 years, male, stage:iv, dead, 366 days 596.8
TCGA-CD-8527-01A 72 years, female, asian, stage:ii, dead, 218 days 595.5
TCGA-BR-6707-01A 75 years, male, white, stage:iia, alive, 605 days 581.4
TCGA-BR-A44T-01A 53 years, female, white, stage:iia, alive, 1038 days 573.5
TCGA-CG-5722-01A 67 years, female, stage:iv, alive, 30 days 560.0
TCGA-D7-8574-01A 72 years, male, white, stage:iiia, alive, 523 days 557.3
TCGA-BR-4279-01A 44 years, male, white, stage:ii, dead, 291 days 549.5
TCGA-BR-8676-01A 59 years, male, white, stage:iiib, alive, 229 days 548.6
TCGA-D7-8573-01A 57 years, male, white, stage:iia, alive, 593 days 546.1
TCGA-BR-8372-01A 63 years, male, white, stage:iiic, alive, 951 days 544.7
TCGA-HU-A4H5-01A 71 years, male, asian, stage:ib, alive, 724 days 541.3
TCGA-BR-8289-01A 57 years, male, white, stage:iv, dead, 81 days 540.1
TCGA-BR-8487-01A 64 years, female, white, stage:iia, alive, 34 days 537.8
TCGA-CG-4438-01A 56 years, male, stage:iv, alive, 1645 days 531.1
TCGA-SW-A7EA-01A 61 years, female, white, stage:ib, alive, 579 days 530.5
TCGA-VQ-A8P5-01A 67 years, male, white, stage:iia, dead, 235 days 527.7
TCGA-CG-5723-01A 83 years, male, stage:ii, alive, 3196 days 526.1
TCGA-BR-A4J6-01A 69 years, female, white, stage:iia, alive, 20 days 525.4
TCGA-RD-A7C1-01A 82 years, male, white, stage:ib, dead, 507 days 520.7
TCGA-CG-4437-01A 83 years, male, stage:ii, alive, 245 days 516.2
TCGA-BR-8286-01A 49 years, male, white, stage:ii, alive, 895 days 514.6
TCGA-IN-A6RI-01A 45 years, male, white, stage:i, alive, 559 days 513.0
TCGA-IN-A7NR-01A 64 years, female, white, stage:iv, alive, 198 days 510.3
TCGA-BR-8589-01A 56 years, male, white, stage:iiib, alive, 825 days 509.3
TCGA-BR-A4QL-01A 75 years, female, white, stage:iiib, dead, 491 days 509.0
TCGA-RD-A7BS-01A 46 years, male, white, stage:iiia, dead, 336 days 501.9
TCGA-KB-A6F7-01A 54 years, female, stage:ib, alive, 1935 days 499.0
TCGA-D7-A748-01A 41 years, female, white, stage:iv, dead, 132 days 498.3
TCGA-D7-5577-01A 53 years, female, white, stage:iiia, dead, 782 days 496.1
TCGA-FP-8210-01A 48 years, male, asian, stage:iiia, dead, 153 days 492.2
TCGA-BR-8366-01A 80 years, female, white, stage:iia, alive, 29 days 491.2
TCGA-HU-A4GX-01A 70 years, female, asian, stage:iiic, alive, 616 days 487.7
TCGA-HU-8604-01A 82 years, female, asian, stage:iia, alive, 694 days 486.6
TCGA-BR-7959-01A 59 years, male, white, stage:iiia, alive, 1010 days 484.3
TCGA-CD-A487-01A 51 years, male, asian, stage:iib, alive, 374 days 484.2
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:iiic, dead, 3 days 483.8
TCGA-IN-A6RL-01A 84 years, male, white, dead, 406 days 480.2
TCGA-BR-8081-01A 71 years, female, white, stage:iib, alive, 981 days 479.1
TCGA-BR-6566-01A 64 years, female, white, stage:iia, alive, 997 days 475.8
TCGA-CD-8525-01A 82 years, female, asian, stage:iiia, alive, 383 days 474.8
TCGA-VQ-A91D-01A 70 years, male, white, stage:iiic, dead, 356 days 471.9
TCGA-HU-A4H0-01A 72 years, male, asian, stage:iiic, alive, 64 days 471.1
TCGA-D7-A4YX-01A 63 years, male, white, stage:iib, alive, 1108 days 470.9
TCGA-BR-A44U-01A 70 years, male, white, stage:iiib, dead, 422 days 467.1
TCGA-EQ-8122-01A 72 years, female, white, stage:iib, dead, 243 days 464.6
TCGA-CD-8531-01A 66 years, female, asian, stage:iiia, alive, 383 days 463.6
TCGA-IN-A6RR-01A 84 years, male, white, dead, 205 days 463.2
TCGA-IN-A7NT-01A 73 years, female, white, stage:iib, alive, 323 days 463.2
TCGA-CD-8530-01A 52 years, male, asian, stage:ii, alive, 377 days 462.0
TCGA-IN-A6RS-01A 76 years, male, white, stage:ia, alive, 383 days 460.4
TCGA-D7-6525-01A 58 years, male, white, stage:iiia, dead, 406 days 458.9
TCGA-CG-4436-01A 57 years, male, stage:ib, alive, 243 days 457.2
TCGA-CD-5798-01A 83 years, male, asian, stage:ii, alive, 408 days 451.9
TCGA-IN-A7NU-01A 69 years, male, white, stage:iiib, alive, 356 days 450.1
TCGA-CD-5801-01A male, asian, stage:iiia, dead, 401 days 449.0
TCGA-RD-A7BW-01A 68 years, female, white, stage:ib, dead, 156 days 447.5
TCGA-BR-6453-01A 54 years, male, white, stage:iia, alive, 485 days 444.2
TCGA-R5-A7O7-01A 52 years, male, white, stage:iv, alive, 1389 days 443.8
TCGA-VQ-A8DU-01A 63 years, male, white, stage:iiia, dead, 166 days 443.3
TCGA-CD-A4MG-01A 76 years, male, asian, stage:iia, dead, 200 days 443.2
TCGA-CG-4469-01A 70 years, male, stage:iv, dead, 215 days 432.7
TCGA-HJ-7597-01A 71 years, female, white, stage:ib, dead, 805 days 429.2
TCGA-D7-A6EX-01A 72 years, female, white, stage:iiia, alive, 86 days 428.8
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:iiic, alive, 650 days 426.0
TCGA-BR-7958-01A 60 years, male, white, stage:iiib, alive, 899 days 424.2
TCGA-BR-6563-01A 60 years, male, white, stage:iib, alive, 679 days 421.3
TCGA-HF-A5NB-01A 75 years, female, stage:iiic, alive, 928 days 419.0
TCGA-BR-8080-01A 72 years, female, white, stage:iiic, dead, 292 days 418.9
TCGA-BR-7707-01A 69 years, female, white, stage:ib, alive, 1090 days 417.2
TCGA-VQ-A925-01A 66 years, male, white, stage:iiia, dead, 138 days 415.2
TCGA-HU-A4H6-01A 72 years, female, asian, stage:iiia, alive, 644 days 414.8
TCGA-HU-A4G3-01A 54 years, male, asian, stage:iib, alive, 170 days 413.6
TCGA-CG-4466-01A 81 years, female, stage:ib, alive, 577 days 413.0
TCGA-BR-8381-01A 51 years, male, white, stage:iib, alive, 224 days 407.9
TCGA-BR-8284-01A 72 years, female, white, stage:iiic, dead, 245 days 405.4
TCGA-CG-5726-01A 73 years, male, stage:ia, dead, 881 days 404.2
TCGA-CD-5813-01A 60 years, male, asian, stage:ii, dead, 377 days 402.2
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:iv, dead, 262 days 401.6
TCGA-BR-7722-01A 62 years, male, white, stage:iib, dead, 466 days 394.0
TCGA-BR-8077-01A 58 years, female, white, stage:iiib, alive, 21 days 393.4
TCGA-HU-8244-01A 77 years, female, asian, stage:ia, alive, 742 days 392.1
TCGA-B7-A5TI-01A 52 years, male, white, stage:iiic, alive, 595 days 392.0
TCGA-IN-A6RN-01A 72 years, female, white, stage:iia, alive, 594 days 391.1
TCGA-D7-6527-01A 62 years, male, white, stage:ii, dead, 312 days 390.6
TCGA-BR-8680-01A 45 years, male, asian, stage:iv, alive, 972 days 388.3
TCGA-D7-6522-01A 58 years, male, white, stage:ib, alive, 566 days 386.4
TCGA-VQ-A8DV-01A 48 years, male, white, stage:ib, dead, 403 days 382.9
TCGA-BR-8371-01A 62 years, male, white, stage:iiib, dead, 359 days 380.5
TCGA-R5-A7ZI-01A 44 years, female, white, stage:iv, alive, 2267 days 376.3
TCGA-BR-8295-01A 60 years, female, white, stage:iib, dead, 67 days 374.4
TCGA-CG-5721-01A 58 years, male, stage:iv, alive, 183 days 373.9
TCGA-BR-8365-01A 70 years, female, white, stage:iia, dead, 533 days 373.8
TCGA-CD-8535-01A 59 years, male, asian, stage:iiia, alive, 390 days 372.5
TCGA-SW-A7EB-01A 45 years, male, white, stage:iiia, alive, 176 days 370.2
TCGA-HU-A4H2-01A 58 years, female, asian, stage:iiib, alive, 394 days 368.6
TCGA-VQ-A94T-01A 73 years, male, stage:iiib, dead, 342 days 368.4
TCGA-BR-8058-01A 53 years, female, white, stage:iiib, alive, 1133 days 367.6
TCGA-IN-7806-01A 50 years, male, white, stage:iib, alive, 1106 days 365.3
TCGA-3M-AB46-01A male, white, stage:ib, alive, 1765 days 363.0
TCGA-BR-8686-01A 69 years, male, asian, stage:iiib, dead, 635 days 362.7
TCGA-BR-6455-01A 59 years, male, white, stage:iib, dead, 422 days 362.7
TCGA-D7-6526-01A 67 years, female, white, stage:iiia, alive, 523 days 358.5
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:iii, dead, 185 days 358.1
TCGA-CG-5720-01A 71 years, male, stage:ib, dead, 30 days 356.1
TCGA-CD-A48C-01A 80 years, female, asian, stage:iib, dead, 353 days 355.8
TCGA-FP-8211-01A 62 years, male, white, stage:iib, alive, 413 days 354.0
TCGA-BR-8588-01A 55 years, female, white, stage:iib, alive, 389 days 351.7
TCGA-IN-A6RJ-01A 64 years, male, white, stage:ia, alive, 379 days 351.2
TCGA-VQ-A8PB-01A 65 years, female, white, stage:ii, dead, 1043 days 351.2
TCGA-CG-4440-01A 68 years, female, stage:iv, dead, 122 days 349.7
TCGA-BR-A4J7-01A 49 years, male, asian, stage:iib, alive, 989 days 344.5
TCGA-D7-A747-01A 57 years, male, white, stage:iib, dead, 255 days 341.5
TCGA-HU-A4HD-01A 73 years, male, asian, stage:iiia, alive, 1016 days 341.0
TCGA-CG-5725-01A 72 years, male, stage:ib, dead, 457 days 339.9
TCGA-BR-4280-01A 78 years, female, white, stage:iii, dead, 201 days 339.5
TCGA-BR-4253-01A 80 years, female, white, stage:iiia, dead, 124 days 339.1
TCGA-VQ-A8P3-01A 72 years, male, white, stage:iiia, alive, 1132 days 338.1
TCGA-RD-A8MW-01A 72 years, male, white, stage:iiib, dead, 1153 days 337.4
TCGA-D7-5578-01A 80 years, male, white, stage:iiia, alive, 385 days 336.1
TCGA-HU-A4GC-01A 74 years, male, asian, stage:iiib, alive, 99 days 335.8
TCGA-CD-5803-01A 78 years, female, asian, stage:ii, dead, 341 days 334.7
TCGA-D7-8572-01A 57 years, male, white, stage:iib, alive, 511 days 334.7
TCGA-BR-8690-01A 54 years, female, white, stage:iiib, alive, 325 days 334.5
TCGA-BR-8060-01A 75 years, female, white, stage:iib, dead, 348 days 334.5
TCGA-BR-A4J9-01A 55 years, male, white, stage:iia, alive, 14 days 333.8
TCGA-CD-8526-01A 73 years, female, asian, stage:iiia, alive, 381 days 332.6
TCGA-D7-A4YU-01A 73 years, male, white, stage:iiib, alive, 500 days 329.1
TCGA-BR-8297-01A 58 years, male, white, stage:iiic, alive, 225 days 328.7
TCGA-CD-8532-01A 52 years, male, asian, stage:ii, dead, 354 days 327.8
TCGA-VQ-A8P2-01A 68 years, male, white, stage:iiia, alive, 1160 days 326.9
TCGA-B7-A5TN-01A 60 years, male, white, stage:iib, alive, 287 days 326.4
TCGA-RD-A8N5-01A 78 years, male, white, stage:iiia, dead, 1747 days 326.2
TCGA-RD-A8N6-01A 78 years, female, white, stage:iiia, dead, 272 days 323.7
TCGA-CD-A489-01A 58 years, male, asian, stage:iia, dead, 344 days 323.0
TCGA-CG-4306-01A 90 years, male, stage:iv, dead, 31 days 321.4
TCGA-FP-7735-01A 77 years, male, black or african american, stage:ib, dead, 106 days 320.9
TCGA-CG-4460-01A 66 years, female, stage:iv, dead, 669 days 319.2
TCGA-BR-8677-01A 74 years, female, white, stage:iiib, alive, 813 days 318.5
TCGA-HU-A4G8-01A 71 years, female, asian, stage:iib, alive, 690 days 316.0
TCGA-CD-5800-01A female, asian, stage:ii, alive, 400 days 315.3
TCGA-HU-8249-01A 76 years, male, asian, stage:iiia, alive, 881 days 313.8
TCGA-CG-5719-01A 54 years, female, stage:iv, alive, 31 days 311.8
TCGA-F1-A72C-01A 68 years, male, asian, stage:iia, alive, 346 days 310.6
TCGA-VQ-AA6F-01A 58 years, male, white, stage:iib, alive, 1646 days 308.8
TCGA-HU-A4H3-01A 56 years, female, asian, stage:iiic, alive, 882 days 308.4
TCGA-BR-6564-01A 46 years, female, white, stage:iiia, dead, 794 days 308.2
TCGA-BR-8382-01A 67 years, female, white, stage:iiic, dead, 762 days 307.4
TCGA-BR-7715-01A 65 years, male, white, stage:iia, alive, 1023 days 304.0
TCGA-B7-A5TK-01A 51 years, male, white, stage:iiia, alive, 288 days 301.9
TCGA-CG-4475-01A 76 years, male, stage:iib, alive, 699 days 299.7
TCGA-CG-5734-01A 68 years, male, stage:iiia, dead, 243 days 299.6
TCGA-CD-A4MH-01A 86 years, female, asian, stage:iia, alive, 371 days 299.6
TCGA-BR-8364-01A 42 years, female, white, stage:iiic, alive, 675 days 298.2
TCGA-BR-4201-01A 66 years, female, white, dead, 940 days 297.7
TCGA-BR-6705-01A 68 years, female, white, stage:iiib, dead, 779 days 297.7
TCGA-CD-8529-01A 65 years, male, asian, stage:iv, alive, 374 days 296.9
TCGA-D7-A6EZ-01A 66 years, male, white, stage:iiia, dead, 618 days 296.9
TCGA-BR-8291-01A 61 years, male, white, stage:iib, dead, 607 days 294.9
TCGA-FP-A4BF-01A 68 years, male, white, stage:iiia, dead, 168 days 294.9
TCGA-CD-A486-01A 68 years, male, asian, stage:iia, dead, 192 days 291.9
TCGA-BR-A4J4-01A 39 years, male, asian, stage:iiib, alive, 16 days 291.2
TCGA-BR-4191-01A 72 years, male, white, dead, 558 days 289.7
TCGA-BR-8369-01A 76 years, female, white, stage:iiib, alive, 427 days 289.5
TCGA-D7-A6F0-01A 79 years, female, white, stage:ib, alive, 678 days 289.4
TCGA-D7-A6EY-01A 72 years, female, white, stage:iiib, dead, 348 days 287.7
TCGA-D7-A6F2-01A 62 years, male, white, stage:ib, alive, 476 days 287.2
TCGA-VQ-A91X-01A 74 years, male, white, stage:iiib, dead, 289 days 286.6
TCGA-HF-7133-01A female, stage:iv, alive, 1918 days 285.1
TCGA-HU-A4H4-01A 53 years, female, asian, stage:iib, alive, 725 days 284.1
TCGA-D7-8570-01A 44 years, male, white, stage:iiib, alive, 752 days 283.1
TCGA-BR-7704-01A 69 years, female, white, stage:ii, alive, 1072 days 282.3
TCGA-VQ-A91Z-01A 67 years, female, white, stage:iiia, alive, 1690 days 280.8
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:iiib, alive, 838 days 280.6
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:iiib, alive, 1319 days 280.0
TCGA-CG-4465-01A 69 years, female, stage:iv, dead, 274 days 279.8
TCGA-BR-7957-01A 50 years, female, white, stage:iv, dead, 276 days 279.6
TCGA-BR-A4J8-01A 71 years, female, white, stage:iiib, alive, 411 days 278.9
TCGA-MX-A5UJ-01A 86 years, female, white, stage:iiia, alive, 600 days 278.9
TCGA-RD-A8MV-01A 56 years, male, white, stage:iiib, alive, 3720 days 278.2
TCGA-CD-A48A-01A 57 years, male, asian, stage:iia, alive, 378 days 277.5
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:iv, dead, 396 days 275.7
TCGA-RD-A8N0-01A 53 years, female, white, stage:iiib, alive, 1236 days 275.6
TCGA-BR-6457-01A 69 years, male, white, stage:iia, alive, 416 days 275.5
TCGA-BR-7851-01A 74 years, male, white, stage:iib, dead, 574 days 274.5
TCGA-BR-A4CS-01A 77 years, male, white, stage:iiic, dead, 45 days 274.4
TCGA-VQ-A94R-01A 63 years, male, white, dead, 1294 days 273.9
TCGA-HU-A4HB-01A 68 years, male, asian, stage:iib, dead, 477 days 273.8
TCGA-CG-4444-01A 76 years, male, stage:iiia, alive, 1431 days 272.2
TCGA-VQ-A8DT-01A 43 years, male, stage:iiib, alive, 1484 days 271.8
TCGA-HU-A4GF-01A 69 years, male, asian, stage:iia, alive, 785 days 270.7
TCGA-HU-A4GP-01A 62 years, female, asian, stage:iia, alive, 273 days 270.5
TCGA-D7-8575-01A 75 years, male, white, stage:iiia, dead, 554 days 270.1
TCGA-BR-A4J5-01A 56 years, male, asian, stage:iiia, alive, 862 days 270.0
TCGA-HU-A4GU-01A 74 years, male, asian, stage:iib, alive, 200 days 269.5
TCGA-BR-7196-01A 64 years, male, white, stage:iv, alive, 666 days 267.4
TCGA-F1-A448-01A 70 years, male, white, stage:iiib, alive, 647 days 267.0
TCGA-BR-8592-01A 63 years, female, white, stage:iiib, dead, 191 days 264.9
TCGA-CG-4477-01A 58 years, female, stage:ib, alive, 942 days 264.2
TCGA-BR-7901-01A 74 years, male, white, stage:iib, dead, 105 days 262.7
TCGA-D7-6528-01A 70 years, female, white, stage:ib, alive, 463 days 261.5
TCGA-R5-A7ZE-01B 66 years, female, white, stage:iiia, dead, 554 days 261.4
TCGA-CG-4305-01A 69 years, male, stage:ii, alive, 485 days 260.8
TCGA-BR-8380-01A 55 years, male, white, stage:iiic, dead, 21 days 260.6
TCGA-VQ-A8E3-01A 79 years, male, white, stage:iia, dead, 661 days 259.5
TCGA-MX-A666-01A 61 years, male, white, stage:iia, alive, 427 days 259.3
TCGA-BR-7723-01A 59 years, male, white, stage:iiib, dead, 874 days 255.6
TCGA-BR-8368-01A 84 years, female, white, stage:ib, alive, 131 days 255.1
TCGA-HU-8602-01A 58 years, female, asian, stage:iib, alive, 679 days 252.9
TCGA-BR-8591-01A 79 years, male, white, stage:iiic, alive, 856 days 252.2
TCGA-BR-6801-01A 70 years, male, white, stage:iia, alive, 1223 days 252.1
TCGA-BR-8296-01A 58 years, female, white, stage:iiic, dead, 474 days 251.5
TCGA-D7-8576-01A 54 years, female, white, stage:iiib, dead, 446 days 250.4
TCGA-VQ-A922-01A 70 years, male, stage:iv, dead, 275 days 250.0
TCGA-CD-8528-01A 43 years, female, asian, stage:iiia, alive, 375 days 248.3
TCGA-F1-6177-01A 90 years, male, black or african american, stage:i, dead, 200 days 248.0
TCGA-KB-A93H-01A 79 years, female, asian, stage:iib, alive, 1145 days 247.3
TCGA-BR-7716-01A 62 years, female, white, stage:iib, alive, 1210 days 246.0
TCGA-CD-8524-01A 61 years, female, asian, stage:ii, alive, 388 days 245.1
TCGA-BR-8483-01A 59 years, male, white, stage:iiia, alive, 164 days 244.7
TCGA-HU-A4H8-01A 77 years, male, asian, stage:ib, alive, 428 days 243.8
TCGA-VQ-A8PH-01A 62 years, male, white, stage:iiib, dead, 389 days 243.0
TCGA-CD-5799-01A 45 years, male, asian, stage:ii, alive, 396 days 241.3
TCGA-FP-8209-01A 49 years, male, white, stage:ib, dead, 1811 days 240.4
TCGA-VQ-AA68-01A 52 years, female, white, stage:iiic, alive, 1328 days 239.6
TCGA-BR-6803-01A 54 years, female, white, stage:iia, alive, 949 days 237.1
TCGA-CG-5732-01A 66 years, male, stage:iv, dead, 2100 days 236.5
TCGA-BR-4257-01A 79 years, female, white, dead, 294 days 235.0
TCGA-HU-A4GY-01A 77 years, female, asian, stage:iiia, alive, 8 days 233.6
TCGA-HU-A4G9-01A 67 years, female, asian, stage:ia, alive, 736 days 233.2
TCGA-CG-4441-01A 83 years, male, stage:iiia, dead, 426 days 232.6
TCGA-BR-7197-01A 69 years, male, white, stage:ii, alive, 280 days 231.4
TCGA-VQ-A8PU-01A 72 years, female, white, stage:iiia, dead, 832 days 231.0
TCGA-VQ-A94U-01A 71 years, male, white, stage:iib, alive, 819 days 228.8
TCGA-BR-A4IV-01A 47 years, male, asian, stage:iiib, dead, 869 days 228.2
TCGA-VQ-A8PO-01A 74 years, male, white, stage:iib, dead, 282 days 227.6
TCGA-D7-6519-01A 64 years, female, white, alive, 625 days 227.5
TCGA-BR-6709-01A 57 years, female, white, stage:iiib, dead, 370 days 227.0
TCGA-HU-A4GD-01A 56 years, male, asian, stage:iib, alive, 692 days 226.4
TCGA-CD-5804-01A 90 years, male, asian, alive, 368 days 225.6
TCGA-VQ-A91U-01A 78 years, male, asian, stage:iiia, dead, 52 days 225.4
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:iiic, dead, 640 days 222.4
TCGA-BR-6802-01A 65 years, male, white, stage:iiia, alive, 940 days 221.0
TCGA-BR-4267-01A 51 years, male, white, stage:ib, dead, 188 days 219.8
TCGA-R5-A805-01A 71 years, male, white, stage:iiib, dead, 281 days 218.1
TCGA-BR-4187-01A 56 years, male, white, dead, 141 days 216.4
TCGA-D7-6521-01A 65 years, male, white, alive, 564 days 216.4
TCGA-BR-8687-01A 67 years, female, white, stage:iiic, dead, 250 days 215.0
TCGA-FP-7916-01A 78 years, male, asian, stage:iiic, dead, 428 days 214.9
TCGA-VQ-A924-01A 69 years, male, stage:ii, dead, 1686 days 213.2
TCGA-BR-6852-01A 64 years, female, white, stage:iia, alive, 1367 days 213.0
TCGA-F1-6875-01A 80 years, male, black or african american, stage:ia, dead, 2197 days 211.7
TCGA-BR-8486-01A 90 years, female, white, stage:ia, alive, 615 days 211.5
TCGA-D7-A4Z0-01A 60 years, female, white, stage:iib, alive, 449 days 210.8
TCGA-FP-8099-01A 79 years, male, white, stage:iia, alive, 519 days 210.8
TCGA-HF-7132-01A male, stage:ii, alive, 2351 days 209.2
TCGA-FP-7998-01A 77 years, male, white, stage:iiic, alive, 678 days 208.1
TCGA-BR-6452-01A 78 years, female, white, stage:iia, alive, 1055 days 206.1
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:iiic, dead, 24 days 205.6
TCGA-VQ-A8PE-01A 78 years, male, white, stage:iiib, dead, 675 days 205.3
TCGA-D7-6815-01A 70 years, female, white, stage:iib, alive, 486 days 205.2
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:iv, dead, 476 days 204.9
TCGA-RD-A8N2-01A 59 years, female, white, stage:ib, alive, 3540 days 204.8
TCGA-HU-8608-01A 70 years, male, asian, stage:iiib, alive, 641 days 204.1
TCGA-MX-A663-01A 66 years, male, white, stage:iia, dead, 300 days 204.0
TCGA-HU-8610-01A 75 years, male, asian, stage:ia, alive, 23 days 203.4
TCGA-VQ-A8PC-01A 65 years, male, white, stage:iiia, dead, 1407 days 202.9
TCGA-VQ-A8E7-01B 59 years, male, white, stage:iv, alive, 1138 days 200.0
TCGA-BR-8682-01A 52 years, male, asian, stage:iib, alive, 991 days 200.0
TCGA-BR-8384-01A 69 years, male, white, stage:iiic, alive, 113 days 197.6
TCGA-BR-8373-01A 65 years, female, white, stage:iiia, alive, 450 days 197.1
TCGA-BR-8678-01A 76 years, male, white, stage:ib, alive, 754 days 194.7
TCGA-VQ-AA6D-01A 52 years, female, stage:iiia, alive, 521 days 194.2
TCGA-CG-4301-01A 75 years, female, stage:iv, alive, 92 days 190.8
TCGA-BR-A4PF-01A 72 years, male, white, stage:iiib, alive, 35 days 189.7
TCGA-VQ-A928-01A 49 years, male, white, stage:iv, dead, 174 days 189.3
TCGA-BR-8485-01A 68 years, female, white, stage:iiic, alive, 280 days 186.6
TCGA-D7-6818-01A 53 years, male, white, stage:iiia, dead, 376 days 186.6
TCGA-D7-6524-01A 53 years, male, white, stage:ii, alive, 543 days 186.3
TCGA-BR-8367-01A 56 years, male, white, stage:iiib, dead, 801 days 185.5
TCGA-RD-A8N9-01A 63 years, female, asian, stage:ii, alive, 1083 days 185.4
TCGA-IN-AB1V-01A 63 years, male, white, stage:ia, alive, 479 days 183.4
TCGA-VQ-A91N-01A 59 years, female, stage:iv, dead, 570 days 182.7
TCGA-RD-A8N4-01A 58 years, female, white, stage:iiia, alive, 2171 days 180.5
TCGA-BR-4256-01A 80 years, male, white, dead, 284 days 180.0
TCGA-FP-A8CX-01A 60 years, male, white, stage:iiic, alive, 7 days 179.3
TCGA-CG-4443-01A 68 years, male, stage:ia, alive, 912 days 176.4
TCGA-RD-A8NB-01A 80 years, female, white, stage:iiia, dead, 513 days 175.7
TCGA-CG-5717-01A 58 years, male, stage:ii, dead, 212 days 175.5
TCGA-VQ-A91A-01A 67 years, male, white, stage:iiib, alive, 1200 days 175.2
TCGA-VQ-A8PM-01A 56 years, male, white, stage:iv, dead, 57 days 174.5
TCGA-HF-7134-01A male, stage:ia, alive, 1588 days 173.7
TCGA-MX-A5UG-01A 78 years, male, asian, stage:iiia, dead, 113 days 172.7
TCGA-FP-A9TM-01A 77 years, male, white, alive, 189 days 172.1
TCGA-FP-7829-01A 69 years, male, white, stage:iib, alive, 594 days 172.1
TCGA-D7-8578-01A 72 years, male, white, stage:ib, alive, 643 days 171.7
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:iib, alive, 942 days 171.1
TCGA-VQ-A8PP-01A 76 years, male, stage:iv, dead, 712 days 170.3
TCGA-BR-8590-01A 62 years, male, white, stage:iiic, dead, 284 days 170.2
TCGA-VQ-A91V-01A 58 years, male, stage:iiia, alive, 1297 days 168.2
TCGA-ZA-A8F6-01A 71 years, male, white, stage:ib, alive, 525 days 168.1
TCGA-VQ-A8PJ-01A 53 years, male, stage:iv, dead, 82 days 166.6
TCGA-VQ-A8PF-01A 77 years, male, stage:iiib, dead, 76 days 165.5
TCGA-BR-6458-01A 57 years, female, white, stage:iib, dead, 588 days 164.9
TCGA-CD-8533-01A 48 years, male, asian, stage:ii, alive, 468 days 163.9
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:iiia, dead, 562 days 161.4
TCGA-D7-8579-01A 66 years, female, white, stage:iib, alive, 636 days 160.8
TCGA-B7-A5TJ-01A 74 years, male, white, stage:iib, alive, 335 days 160.8
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:iiib, alive, 1000 days 159.1
TCGA-D7-A6EV-01A 71 years, female, white, stage:iib, alive, 342 days 158.5
TCGA-F1-6874-01A 79 years, male, white, stage:ib, alive, 440 days 155.5
TCGA-VQ-A923-01A 90 years, male, white, stage:iiia, dead, 61 days 153.7
TCGA-VQ-A94P-01A 57 years, male, white, dead, 81 days 152.9
TCGA-RD-A8N1-01A 70 years, male, white, stage:iiib, alive, 3519 days 151.2
TCGA-VQ-AA6K-01A 60 years, male, white, stage:iiic, dead, 378 days 149.9
TCGA-VQ-A8PD-01A 69 years, male, white, stage:iiic, dead, 496 days 149.0
TCGA-VQ-A91K-01A 69 years, male, white, stage:iiia, alive, 1862 days 145.8
TCGA-BR-6456-01A 74 years, female, white, stage:iib, dead, 526 days 145.6
TCGA-HU-A4GH-01A 75 years, male, asian, stage:ia, alive, 358 days 145.6
TCGA-BR-8484-01A 61 years, male, white, stage:iiia, dead, 766 days 145.3
TCGA-IP-7968-01A 74 years, male, white, stage:iiib, alive, 77 days 144.7
TCGA-VQ-AA64-01A 68 years, male, white, stage:iiib, dead, 560 days 140.0
TCGA-VQ-A92D-01A 67 years, male, white, stage:ib, alive, 2032 days 134.2
TCGA-VQ-A91E-01A 67 years, female, white, stage:iiib, alive, 664 days 134.2
TCGA-VQ-A91Y-01A 67 years, male, white, stage:iiic, dead, 296 days 130.4
TCGA-FP-8631-01A 68 years, male, white, stage:iiia, alive, 17 days 130.1
TCGA-IN-AB1X-01A 78 years, female, white, stage:iia, alive, 411 days 129.2
TCGA-VQ-AA69-01A 35 years, male, white, stage:iiia, alive, 864 days 128.0
TCGA-VQ-A927-01A 81 years, male, white, stage:iiib, dead, 200 days 127.6
TCGA-BR-8683-01A 75 years, male, asian, stage:iiib, dead, 300 days 124.8
TCGA-BR-6710-01A 41 years, male, white, stage:ib, alive, 273 days 124.0
TCGA-VQ-A8PX-01A 51 years, male, stage:ia, alive, 1964 days 123.1
TCGA-VQ-A8PK-01A 58 years, male, white, stage:iiib, dead, 543 days 121.5
TCGA-VQ-AA6G-01A 68 years, male, white, stage:iia, dead, 792 days 121.2
TCGA-VQ-A91Q-01A 61 years, male, stage:iv, dead, 633 days 116.5
TCGA-D7-6520-01A 53 years, male, white, stage:iiia, alive, 573 days 116.2
TCGA-D7-6822-01A 77 years, male, white, stage:ib, alive, 375 days 113.5
TCGA-IN-8663-01A 68 years, male, white, stage:iib, dead, 103 days 112.0
TCGA-CG-5718-01A 78 years, female, stage:ii, dead, 1095 days 109.3
TCGA-KB-A93J-01A 78 years, male, white, stage:ii, alive, 1124 days 104.9
TCGA-KB-A93G-01A 68 years, male, white, stage:ib, alive, 613 days 94.2
TCGA-VQ-AA6A-01A 56 years, male, white, stage:iiic, alive, 1184 days 82.9
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more

Antibody HPA002649
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Click images for details

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.