MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1109.6 nTPM
HPA:1109.6 nTPM
GTEx:1208.8 nTPM
FANTOM5:44.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1109.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1081.9
1870 Female, age 42, unknown 1101.0
2219 Male, age 76, both hemispheres 1089.4
2586 Male, age 75, left hemisphere 1089.1
1827 Male, age 72, unknown 1085.6
2666 Male, age 74, left hemisphere 1085.0
1830 Male, age 51, unknown 1082.4
2828 Female, age 72, unknown 1080.1
1833 Male, age 53, unknown 1076.9
2019 Male, age 18, unknown 1068.5
2411 Female, age 72, unknown 1060.9
Dorsal raphe nucleus
nTPM: 1084.6
2298 Female, age 72, unknown 1093.4
2750 Male, age 76, both hemispheres 1091.2
1828 Male, age 53, unknown 1081.6
2047 Male, age 72, unknown 1079.1
2016 Female, age 72, unknown 1077.8
Inferior colliculus
nTPM: 1089.4
1890 Male, age 53, unknown 1097.6
2849 Male, age 72, unknown 1095.5
1848 Female, age 42, unknown 1084.3
2097 Female, age 72, unknown 1080.3
Median raphe nucleus
nTPM: 1103.2
2220 Male, age 76, midline 1103.2
Pedunculopontine tegmental nucleus
nTPM: 1109.6
2338 Male, age 61, both hemispheres 1136.0
2334 Male, age 80, both hemispheres 1116.5
1921 Female, age 85, both hemispheres 1076.4
Periaquaductal grey, anterior
nTPM: 1090.1
2502 Female, age 75, unknown 1106.9
1795 Male, age 51, unknown 1084.0
1947 Male, age 18, unknown 1079.5
Periaquaductal grey, dorsal
nTPM: 1083.5
2850 Male, age 76, both hemispheres 1109.1
1840 Male, age 53, unknown 1092.2
1831 Male, age 72, unknown 1071.1
2464 Female, age 72, unknown 1061.6
Periaquaductal grey, lateral
nTPM: 1080.5
2140 Male, age 76, both hemispheres 1087.4
2053 Male, age 18, unknown 1079.4
2272 Male, age 74, both hemispheres 1074.9
Pretectal area
nTPM: 1083.2
2224 Female, age 72, unknown 1101.4
2825 Male, age 18, unknown 1092.5
1944 Female, age 72, unknown 1091.6
1816 Male, age 51, unknown 1085.2
1817 Female, age 42, unknown 1084.8
2007 Male, age 72, unknown 1082.8
2316 Male, age 76, right hemisphere 1081.3
1815 Male, age 53, unknown 1080.2
2667 Female, age 75, unknown 1074.3
2407 Male, age 75, both hemispheres 1072.0
2273 Male, age 74, both hemispheres 1069.5
Red nucleus
nTPM: 1090.3
2503 Female, age 72, unknown 1112.6
1865 Male, age 51, unknown 1105.6
1904 Male, age 53, unknown 1096.3
1821 Female, age 72, unknown 1093.9
2227 Male, age 72, unknown 1093.0
2725 Female, age 75, unknown 1092.3
2769 Male, age 72, unknown 1089.7
2785 Male, age 18, unknown 1087.6
1954 Female, age 42, unknown 1082.3
2584 Male, age 75, left hemisphere 1079.5
2588 Male, age 74, left hemisphere 1078.2
2823 Male, age 76, right hemisphere 1073.0
Substantia nigra
nTPM: 1104.7
2699 Male, age 18, unknown 1139.6
2665 Male, age 74, both hemispheres 1119.8
2409 Female, age 72, unknown 1119.3
1851 Male, age 51, unknown 1115.9
1916 Female, age 42, unknown 1109.1
2241 Male, age 72, unknown 1103.7
1889 Female, age 72, unknown 1100.3
1941 Male, age 53, unknown 1088.3
2590 Female, age 75, unknown 1088.0
2583 Male, age 75, right hemisphere 1063.5
Superior colliculus
nTPM: 1090.7
2587 Male, age 74, left hemisphere 1113.8
1913 Female, age 42, unknown 1107.7
1796 Male, age 53, unknown 1104.6
2668 Female, age 75, unknown 1095.0
1995 Male, age 72, unknown 1093.2
2261 Male, age 18, unknown 1080.9
1895 Male, age 76, right hemisphere 1079.8
1839 Male, age 51, unknown 1079.1
2087 Female, age 72, unknown 1077.8
2664 Male, age 75, both hemispheres 1074.7
Ventral tegmental area
nTPM: 1099.7
2223 Female, age 72, unknown 1131.9
1915 Female, age 42, unknown 1119.0
2218 Male, age 76, both hemispheres 1099.9
1942 Male, age 51, unknown 1085.3
2021 Male, age 53, unknown 1083.4
2410 Female, age 72, unknown 1078.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1208.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1208.8
Samples: 139

Max nTPM: 3665.3
Min nTPM: 537.4
Std nTPM: 445.5
Median nTPM: 1141.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3665.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2738.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2543.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2445.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2382.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2217.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2012.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1984.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1940.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1864.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1859.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.1
FF:10158-103A5 76 years, female 44.1

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