MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:131.0 nTPM
HPA:131.0 nTPM
GTEx:127.8 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:73.6 nTPM
Mouse:184.7 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.9
2019 Male, age 18, unknown 132.3
2411 Female, age 72, unknown 131.7
1827 Male, age 72, unknown 129.7
1870 Female, age 42, unknown 127.2
2828 Female, age 72, unknown 126.3
2666 Male, age 74, left hemisphere 126.1
2219 Male, age 76, both hemispheres 125.8
2586 Male, age 75, left hemisphere 124.5
1833 Male, age 53, unknown 122.9
1830 Male, age 51, unknown 122.4
Dorsal raphe nucleus
nTPM: 130.2
2298 Female, age 72, unknown 138.5
2750 Male, age 76, both hemispheres 130.2
1828 Male, age 53, unknown 129.4
2047 Male, age 72, unknown 128.8
2016 Female, age 72, unknown 124.2
Inferior colliculus
nTPM: 127.5
2097 Female, age 72, unknown 132.8
1890 Male, age 53, unknown 130.7
1848 Female, age 42, unknown 125.5
2849 Male, age 72, unknown 120.8
Median raphe nucleus
nTPM: 128.7
2220 Male, age 76, midline 128.7
Pedunculopontine tegmental nucleus
nTPM: 128.9
1921 Female, age 85, both hemispheres 129.4
2334 Male, age 80, both hemispheres 129.0
2338 Male, age 61, both hemispheres 128.2
Periaquaductal grey, anterior
nTPM: 130.0
2502 Female, age 75, unknown 130.5
1795 Male, age 51, unknown 129.8
1947 Male, age 18, unknown 129.7
Periaquaductal grey, dorsal
nTPM: 123.4
1840 Male, age 53, unknown 125.1
2464 Female, age 72, unknown 124.2
1831 Male, age 72, unknown 123.4
2850 Male, age 76, both hemispheres 120.8
Periaquaductal grey, lateral
nTPM: 125.1
2272 Male, age 74, both hemispheres 128.4
2053 Male, age 18, unknown 125.1
2140 Male, age 76, both hemispheres 121.9
Pretectal area
nTPM: 130.1
2007 Male, age 72, unknown 138.0
1816 Male, age 51, unknown 136.5
1817 Female, age 42, unknown 135.9
1944 Female, age 72, unknown 132.6
2273 Male, age 74, both hemispheres 130.3
1815 Male, age 53, unknown 130.1
2667 Female, age 75, unknown 129.3
2224 Female, age 72, unknown 128.4
2825 Male, age 18, unknown 124.4
2316 Male, age 76, right hemisphere 123.8
2407 Male, age 75, both hemispheres 122.1
Red nucleus
nTPM: 129.2
1821 Female, age 72, unknown 136.2
1954 Female, age 42, unknown 130.9
2503 Female, age 72, unknown 130.0
2227 Male, age 72, unknown 129.9
2769 Male, age 72, unknown 129.8
2785 Male, age 18, unknown 129.6
2725 Female, age 75, unknown 129.3
1904 Male, age 53, unknown 128.6
2588 Male, age 74, left hemisphere 127.6
1865 Male, age 51, unknown 127.0
2823 Male, age 76, right hemisphere 126.3
2584 Male, age 75, left hemisphere 125.7
Substantia nigra
nTPM: 130.6
1916 Female, age 42, unknown 141.7
1851 Male, age 51, unknown 138.8
1889 Female, age 72, unknown 136.0
2590 Female, age 75, unknown 130.9
1941 Male, age 53, unknown 130.3
2241 Male, age 72, unknown 128.8
2699 Male, age 18, unknown 126.9
2665 Male, age 74, both hemispheres 125.7
2409 Female, age 72, unknown 123.4
2583 Male, age 75, right hemisphere 123.2
Superior colliculus
nTPM: 127.4
2087 Female, age 72, unknown 131.8
1796 Male, age 53, unknown 130.6
2261 Male, age 18, unknown 130.1
2587 Male, age 74, left hemisphere 128.6
1895 Male, age 76, right hemisphere 127.6
2668 Female, age 75, unknown 126.1
1913 Female, age 42, unknown 125.9
1995 Male, age 72, unknown 125.6
2664 Male, age 75, both hemispheres 124.1
1839 Male, age 51, unknown 123.3
Ventral tegmental area
nTPM: 131.0
2410 Female, age 72, unknown 136.6
1915 Female, age 42, unknown 135.2
2218 Male, age 76, both hemispheres 131.6
1942 Male, age 51, unknown 129.5
2223 Female, age 72, unknown 126.9
2021 Male, age 53, unknown 126.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 127.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.8
Samples: 139

Max nTPM: 250.2
Min nTPM: 55.7
Std nTPM: 31.7
Median nTPM: 122.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 250.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 222.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 210.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 202.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 197.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 196.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 194.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 193.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 192.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 179.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 179.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.6
Pig sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 75.9
Min nTPM: 56.4
Sample A Female 75.9
Sample B Female 58.8
Sample C Male 58.0
Sample D Male 56.4
Periaqueductal gray
nTPM: 43.1
Samples: 3

Max nTPM: 46.8
Min nTPM: 37.8
Sample B Female 44.8
Sample C Male 46.8
Sample D Male 37.8
Substantia nigra
nTPM: 59.7
Samples: 4

Max nTPM: 99.2
Min nTPM: 42.8
Sample A Female 99.2
Sample B Female 48.8
Sample C Male 48.0
Sample D Male 42.8
Superior colliculi
nTPM: 73.6
Samples: 4

Max nTPM: 107.6
Min nTPM: 56.5
Sample A Female 107.6
Sample B Female 60.7
Sample C Male 69.7
Sample D Male 56.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 184.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 184.7
Samples: 4

Max nTPM: 210.7
Min nTPM: 152.9
Sample A Male 210.7
Sample B Male 181.4
Sample C Female 152.9
Sample D Female 193.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
512999 Antisense, RP_040809_02_G08, Mouse strain C57BL/6J (56 days, male) 4.8
81599652 Antisense, RP_071213_01_A11, Mouse strain C57BL/6J (56 days, male) 4.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.