MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.4 nTPM
HPA:80.4 nTPM
GTEx:77.9 nTPM
FANTOM5:168.2 Scaled Tags Per Million
Pig:106.3 nTPM
Mouse:171.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.4
2019 Male, age 18, unknown 83.2
2411 Female, age 72, unknown 81.7
2586 Male, age 75, left hemisphere 81.2
2666 Male, age 74, left hemisphere 80.1
1870 Female, age 42, unknown 79.9
1833 Male, age 53, unknown 77.7
1827 Male, age 72, unknown 74.2
1830 Male, age 51, unknown 73.3
2828 Female, age 72, unknown 71.3
2219 Male, age 76, both hemispheres 71.0
Dorsal raphe nucleus
nTPM: 77.3
2750 Male, age 76, both hemispheres 80.2
1828 Male, age 53, unknown 78.3
2298 Female, age 72, unknown 78.2
2047 Male, age 72, unknown 75.6
2016 Female, age 72, unknown 74.4
Inferior colliculus
nTPM: 72.6
2097 Female, age 72, unknown 76.2
2849 Male, age 72, unknown 72.6
1848 Female, age 42, unknown 71.2
1890 Male, age 53, unknown 70.3
Median raphe nucleus
nTPM: 80.4
2220 Male, age 76, midline 80.4
Pedunculopontine tegmental nucleus
nTPM: 74.4
2334 Male, age 80, both hemispheres 79.3
1921 Female, age 85, both hemispheres 73.2
2338 Male, age 61, both hemispheres 70.7
Periaquaductal grey, anterior
nTPM: 75.1
2502 Female, age 75, unknown 76.9
1947 Male, age 18, unknown 76.6
1795 Male, age 51, unknown 71.8
Periaquaductal grey, dorsal
nTPM: 72.3
2850 Male, age 76, both hemispheres 76.7
1840 Male, age 53, unknown 73.8
2464 Female, age 72, unknown 70.2
1831 Male, age 72, unknown 68.7
Periaquaductal grey, lateral
nTPM: 70.9
2053 Male, age 18, unknown 74.1
2272 Male, age 74, both hemispheres 72.2
2140 Male, age 76, both hemispheres 66.5
Pretectal area
nTPM: 78.0
1944 Female, age 72, unknown 88.2
1816 Male, age 51, unknown 86.8
1817 Female, age 42, unknown 85.0
2007 Male, age 72, unknown 83.6
1815 Male, age 53, unknown 83.5
2224 Female, age 72, unknown 77.0
2667 Female, age 75, unknown 72.6
2273 Male, age 74, both hemispheres 71.9
2407 Male, age 75, both hemispheres 71.7
2825 Male, age 18, unknown 70.6
2316 Male, age 76, right hemisphere 66.8
Red nucleus
nTPM: 76.1
1821 Female, age 72, unknown 80.5
1865 Male, age 51, unknown 80.0
2503 Female, age 72, unknown 79.7
1904 Male, age 53, unknown 79.2
2785 Male, age 18, unknown 78.5
2725 Female, age 75, unknown 78.0
2769 Male, age 72, unknown 75.0
2588 Male, age 74, left hemisphere 73.3
1954 Female, age 42, unknown 73.0
2584 Male, age 75, left hemisphere 72.9
2823 Male, age 76, right hemisphere 72.0
2227 Male, age 72, unknown 71.3
Substantia nigra
nTPM: 79.9
2241 Male, age 72, unknown 87.2
1941 Male, age 53, unknown 85.1
1916 Female, age 42, unknown 82.5
1889 Female, age 72, unknown 82.4
1851 Male, age 51, unknown 81.8
2665 Male, age 74, both hemispheres 78.5
2699 Male, age 18, unknown 77.6
2583 Male, age 75, right hemisphere 77.2
2590 Female, age 75, unknown 76.5
2409 Female, age 72, unknown 70.5
Superior colliculus
nTPM: 76.2
2668 Female, age 75, unknown 80.5
1913 Female, age 42, unknown 80.1
2587 Male, age 74, left hemisphere 79.4
1995 Male, age 72, unknown 78.4
1839 Male, age 51, unknown 77.4
2087 Female, age 72, unknown 77.3
2664 Male, age 75, both hemispheres 72.7
2261 Male, age 18, unknown 72.3
1895 Male, age 76, right hemisphere 72.0
1796 Male, age 53, unknown 71.7
Ventral tegmental area
nTPM: 77.3
2410 Female, age 72, unknown 87.5
2218 Male, age 76, both hemispheres 80.5
1915 Female, age 42, unknown 79.9
2223 Female, age 72, unknown 78.5
1942 Male, age 51, unknown 69.3
2021 Male, age 53, unknown 68.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.9
Samples: 139

Max nTPM: 111.9
Min nTPM: 43.4
Std nTPM: 11.9
Median nTPM: 77.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 111.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 111.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 110.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 102.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 100.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 96.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 96.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 96.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 95.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.2
FF:10158-103A5 76 years, female 168.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.3
Pig sample Sample description nTPM
Midbrain
nTPM: 106.4
Samples: 4

Max nTPM: 121.2
Min nTPM: 91.9
Sample A Female 116.0
Sample B Female 91.9
Sample C Male 121.2
Sample D Male 96.4
Periaqueductal gray
nTPM: 81.1
Samples: 3

Max nTPM: 89.3
Min nTPM: 76.2
Sample B Female 76.2
Sample C Male 89.3
Sample D Male 77.9
Substantia nigra
nTPM: 96.1
Samples: 4

Max nTPM: 117.0
Min nTPM: 77.5
Sample A Female 117.0
Sample B Female 77.5
Sample C Male 96.2
Sample D Male 93.7
Superior colliculi
nTPM: 99.8
Samples: 4

Max nTPM: 115.1
Min nTPM: 66.8
Sample A Female 113.9
Sample B Female 66.8
Sample C Male 115.1
Sample D Male 103.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 171.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.4
Samples: 4

Max nTPM: 179.5
Min nTPM: 161.1
Sample A Male 171.6
Sample B Male 161.1
Sample C Female 179.5
Sample D Female 173.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73573295 Antisense, RP_051121_03_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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