MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:21.6 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:16.3 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.2
2586 Male, age 75, left hemisphere 21.2
2666 Male, age 74, left hemisphere 16.5
2828 Female, age 72, unknown 16.3
2219 Male, age 76, both hemispheres 15.1
2019 Male, age 18, unknown 15.0
1827 Male, age 72, unknown 14.6
1830 Male, age 51, unknown 13.7
1833 Male, age 53, unknown 13.4
1870 Female, age 42, unknown 13.3
2411 Female, age 72, unknown 12.5
Dorsal raphe nucleus
nTPM: 13.9
2016 Female, age 72, unknown 14.7
2047 Male, age 72, unknown 14.4
2298 Female, age 72, unknown 14.2
1828 Male, age 53, unknown 14.0
2750 Male, age 76, both hemispheres 12.3
Inferior colliculus
nTPM: 14.7
2849 Male, age 72, unknown 15.2
1848 Female, age 42, unknown 15.0
1890 Male, age 53, unknown 14.9
2097 Female, age 72, unknown 13.5
Median raphe nucleus
nTPM: 14.0
2220 Male, age 76, midline 14.0
Pedunculopontine tegmental nucleus
nTPM: 13.9
2338 Male, age 61, both hemispheres 14.6
1921 Female, age 85, both hemispheres 13.7
2334 Male, age 80, both hemispheres 13.4
Periaquaductal grey, anterior
nTPM: 15.3
1795 Male, age 51, unknown 16.3
2502 Female, age 75, unknown 15.3
1947 Male, age 18, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 14.3
1840 Male, age 53, unknown 15.1
2850 Male, age 76, both hemispheres 14.4
1831 Male, age 72, unknown 14.1
2464 Female, age 72, unknown 13.8
Periaquaductal grey, lateral
nTPM: 14.7
2140 Male, age 76, both hemispheres 15.6
2053 Male, age 18, unknown 15.2
2272 Male, age 74, both hemispheres 13.2
Pretectal area
nTPM: 15.0
2407 Male, age 75, both hemispheres 17.0
1816 Male, age 51, unknown 15.9
2007 Male, age 72, unknown 15.8
2316 Male, age 76, right hemisphere 15.6
1944 Female, age 72, unknown 15.4
1817 Female, age 42, unknown 15.2
2667 Female, age 75, unknown 14.8
2825 Male, age 18, unknown 14.6
1815 Male, age 53, unknown 14.2
2273 Male, age 74, both hemispheres 13.3
2224 Female, age 72, unknown 13.1
Red nucleus
nTPM: 14.4
2584 Male, age 75, left hemisphere 17.6
2588 Male, age 74, left hemisphere 14.9
2785 Male, age 18, unknown 14.9
2227 Male, age 72, unknown 14.8
2769 Male, age 72, unknown 14.6
2725 Female, age 75, unknown 14.4
2823 Male, age 76, right hemisphere 14.3
1904 Male, age 53, unknown 14.1
2503 Female, age 72, unknown 13.5
1954 Female, age 42, unknown 13.3
1865 Male, age 51, unknown 13.2
1821 Female, age 72, unknown 12.9
Substantia nigra
nTPM: 13.3
2583 Male, age 75, right hemisphere 16.5
2665 Male, age 74, both hemispheres 16.1
2590 Female, age 75, unknown 13.6
1941 Male, age 53, unknown 13.4
1851 Male, age 51, unknown 13.2
2699 Male, age 18, unknown 12.8
1889 Female, age 72, unknown 12.7
1916 Female, age 42, unknown 12.6
2241 Male, age 72, unknown 12.2
2409 Female, age 72, unknown 9.8
Superior colliculus
nTPM: 14.8
2664 Male, age 75, both hemispheres 20.2
2261 Male, age 18, unknown 15.2
2087 Female, age 72, unknown 15.1
1796 Male, age 53, unknown 15.0
2668 Female, age 75, unknown 14.2
1913 Female, age 42, unknown 14.1
1995 Male, age 72, unknown 14.0
1839 Male, age 51, unknown 13.8
1895 Male, age 76, right hemisphere 13.4
2587 Male, age 74, left hemisphere 13.1
Ventral tegmental area
nTPM: 13.1
1942 Male, age 51, unknown 14.5
2021 Male, age 53, unknown 13.9
2223 Female, age 72, unknown 13.4
1915 Female, age 42, unknown 12.8
2410 Female, age 72, unknown 12.1
2218 Male, age 76, both hemispheres 12.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 139

Max nTPM: 45.5
Min nTPM: 10.8
Std nTPM: 6.1
Median nTPM: 20.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 40.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 35.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 32.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 32.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 32.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 32.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 32.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 31.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 18.9
Min nTPM: 11.9
Sample A Female 12.4
Sample B Female 11.9
Sample C Male 18.9
Sample D Male 14.8
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 14.2
Min nTPM: 10.9
Sample B Female 11.1
Sample C Male 14.2
Sample D Male 10.9
Substantia nigra
nTPM: 14.1
Samples: 4

Max nTPM: 18.0
Min nTPM: 9.9
Sample A Female 16.3
Sample B Female 12.3
Sample C Male 18.0
Sample D Male 9.9
Superior colliculi
nTPM: 13.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.9
Sample A Female 14.9
Sample B Female 10.9
Sample C Male 14.8
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.7
Sample A Male 17.8
Sample B Male 17.1
Sample C Female 14.7
Sample D Female 15.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
2527 Antisense, RP_040407_02_E02, Mouse strain C57BL/6J (56 days, male) 5.7
2528 Antisense, RP_040407_02_E02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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