MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA:16.8 nTPM
GTEx:16.8 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.4
2019 Male, age 18, unknown 14.7
2828 Female, age 72, unknown 13.7
1830 Male, age 51, unknown 13.2
1833 Male, age 53, unknown 12.9
2411 Female, age 72, unknown 12.7
2219 Male, age 76, both hemispheres 12.5
2666 Male, age 74, left hemisphere 12.2
1870 Female, age 42, unknown 11.6
2586 Male, age 75, left hemisphere 10.5
1827 Male, age 72, unknown 10.3
Dorsal raphe nucleus
nTPM: 11.9
1828 Male, age 53, unknown 14.7
2047 Male, age 72, unknown 13.8
2750 Male, age 76, both hemispheres 11.9
2016 Female, age 72, unknown 10.8
2298 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 12.2
1848 Female, age 42, unknown 13.1
1890 Male, age 53, unknown 12.9
2097 Female, age 72, unknown 11.8
2849 Male, age 72, unknown 11.0
Median raphe nucleus
nTPM: 11.2
2220 Male, age 76, midline 11.2
Pedunculopontine tegmental nucleus
nTPM: 12.0
1921 Female, age 85, both hemispheres 13.9
2338 Male, age 61, both hemispheres 11.2
2334 Male, age 80, both hemispheres 10.8
Periaquaductal grey, anterior
nTPM: 10.1
1947 Male, age 18, unknown 11.6
1795 Male, age 51, unknown 9.4
2502 Female, age 75, unknown 9.1
Periaquaductal grey, dorsal
nTPM: 9.3
2464 Female, age 72, unknown 10.1
1840 Male, age 53, unknown 9.6
1831 Male, age 72, unknown 9.4
2850 Male, age 76, both hemispheres 8.0
Periaquaductal grey, lateral
nTPM: 9.2
2272 Male, age 74, both hemispheres 9.6
2053 Male, age 18, unknown 9.0
2140 Male, age 76, both hemispheres 8.9
Pretectal area
nTPM: 11.4
2007 Male, age 72, unknown 14.5
1817 Female, age 42, unknown 14.0
2667 Female, age 75, unknown 13.7
1815 Male, age 53, unknown 11.2
1816 Male, age 51, unknown 11.1
2224 Female, age 72, unknown 11.0
1944 Female, age 72, unknown 10.8
2273 Male, age 74, both hemispheres 10.3
2316 Male, age 76, right hemisphere 10.2
2407 Male, age 75, both hemispheres 9.8
2825 Male, age 18, unknown 9.1
Red nucleus
nTPM: 16.8
1821 Female, age 72, unknown 20.6
1954 Female, age 42, unknown 19.5
2227 Male, age 72, unknown 18.4
2823 Male, age 76, right hemisphere 18.4
2588 Male, age 74, left hemisphere 18.1
1904 Male, age 53, unknown 17.9
1865 Male, age 51, unknown 17.8
2769 Male, age 72, unknown 16.0
2503 Female, age 72, unknown 15.6
2725 Female, age 75, unknown 14.0
2785 Male, age 18, unknown 13.8
2584 Male, age 75, left hemisphere 11.4
Substantia nigra
nTPM: 13.4
2409 Female, age 72, unknown 17.7
1916 Female, age 42, unknown 14.7
1851 Male, age 51, unknown 14.4
2590 Female, age 75, unknown 13.8
1889 Female, age 72, unknown 13.6
2665 Male, age 74, both hemispheres 12.6
2699 Male, age 18, unknown 12.5
2583 Male, age 75, right hemisphere 12.2
2241 Male, age 72, unknown 11.5
1941 Male, age 53, unknown 10.7
Superior colliculus
nTPM: 10.7
2087 Female, age 72, unknown 12.7
1895 Male, age 76, right hemisphere 12.5
2261 Male, age 18, unknown 12.0
2587 Male, age 74, left hemisphere 11.6
2668 Female, age 75, unknown 10.7
1839 Male, age 51, unknown 10.5
1796 Male, age 53, unknown 10.2
1995 Male, age 72, unknown 9.7
1913 Female, age 42, unknown 9.3
2664 Male, age 75, both hemispheres 7.8
Ventral tegmental area
nTPM: 11.8
2223 Female, age 72, unknown 15.7
2410 Female, age 72, unknown 12.4
2218 Male, age 76, both hemispheres 11.7
1915 Female, age 42, unknown 11.1
1942 Male, age 51, unknown 10.2
2021 Male, age 53, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.8
Samples: 139

Max nTPM: 59.8
Min nTPM: 3.4
Std nTPM: 7.9
Median nTPM: 16.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 59.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 37.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 33.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 31.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 30.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 28.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.2
Pig sample Sample description nTPM
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.2
Sample C Male 0.9
Sample D Male 1.6
Periaqueductal gray
nTPM: 1.2
Samples: 3

Max nTPM: 1.4
Min nTPM: 1.0
Sample B Female 1.4
Sample C Male 1.0
Sample D Male 1.3
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.1
Sample C Male 0.9
Sample D Male 1.1
Superior colliculi
nTPM: 1.1
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.9
Sample A Female 1.0
Sample B Female 0.9
Sample C Male 1.2
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70543062 Antisense, RP_050329_02_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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