BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:6.5 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:3.4 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.4
1781 Male, age 74, unknown 4.6
2846 Female, age 79, unknown 2.7
1857 Female, age 85, left hemisphere 1.1
2289 Male, age 61, right hemisphere 1.1
2290 Female, age 72, unknown 0.8
2288 Male, age 75, left hemisphere 0.6
1854 Male, age 80, left hemisphere 0.3
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 4.4
2645 Female, age 72, unknown 10.1
2284 Female, age 91, both hemispheres 5.8
2198 Male, age 80, both hemispheres 4.7
2491 Male, age 75, both hemispheres 4.2
1956 Male, age 74, unknown 3.8
2568 Male, age 61, both hemispheres 3.8
2196 Female, age 79, unknown 3.7
2292 Female, age 85, both hemispheres 2.8
2392 Female, age 94, both hemispheres 1.1
Globus pallidus, externus
nTPM: 0.2
1996 Male, age 80, right hemisphere 0.6
2395 Male, age 75, both hemispheres 0.2
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.4
2287 Male, age 75, right hemisphere 1.1
2566 Female, age 72, unknown 1.0
2037 Male, age 80, right hemisphere 0.6
2111 Female, age 85, right hemisphere 0.5
1818 Male, age 74, unknown 0.0
2483 Female, age 94, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.7
2732 Male, age 80, right hemisphere 2.5
1783 Male, age 74, unknown 1.5
2286 Male, age 75, left hemisphere 1.1
1806 Female, age 85, left hemisphere 0.5
2698 Female, age 72, unknown 0.3
1856 Female, age 91, right hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.3
2821 Male, age 75, both hemispheres 4.0
2484 Female, age 94, left hemisphere 3.0
2569 Male, age 61, both hemispheres 1.3
2393 Male, age 80, right hemisphere 0.7
Nucleus of the diagonal band
nTPM: 3.9
2195 Female, age 85, both hemispheres 5.1
1979 Male, age 74, unknown 4.3
2775 Male, age 80, right hemisphere 4.0
1812 Female, age 91, both hemispheres 3.6
2029 Male, age 61, right hemisphere 2.7
Olfactory tubercle
nTPM: 3.7
1998 Female, age 91, both hemispheres 4.9
2856 Male, age 75, right hemisphere 4.7
1846 Male, age 80, right hemisphere 3.0
2487 Female, age 94, left hemisphere 2.5
Putamen
nTPM: 1.3
2647 Male, age 75, left hemisphere 3.1
2466 Female, age 79, unknown 1.8
2489 Female, age 72, unknown 1.3
1829 Male, age 74, unknown 1.2
1838 Male, age 80, right hemisphere 0.9
2482 Female, age 94, left hemisphere 0.5
1937 Female, age 91, right hemisphere 0.1
Septal nuclei
nTPM: 4.1
1960 Male, age 74, unknown 7.8
2031 Female, age 72, unknown 7.0
2629 Female, age 94, right hemisphere 3.4
2009 Female, age 91, both hemispheres 3.3
2059 Female, age 85, both hemispheres 2.7
2199 Male, age 80, right hemisphere 2.6
2394 Male, age 61, left hemisphere 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.2
Samples: 246

Max nTPM: 17.2
Min nTPM: 2.6
Std nTPM: 1.9
Median nTPM: 5.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 17.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 12.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 11.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 11.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 10.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 10.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 10.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 10.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 10.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.5
Samples: 246

Max nTPM: 27.2
Min nTPM: 2.4
Std nTPM: 2.5
Median nTPM: 6.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 27.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 18.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 14.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 14.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 13.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 13.4
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 12.9
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 12.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 11.3
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 10.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 10.4
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Brain - Putamen (basal ganglia)
Average nTPM: 6.5
Samples: 205

Max nTPM: 22.8
Min nTPM: 2.5
Std nTPM: 2.2
Median nTPM: 6.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 22.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 13.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 13.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 12.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 12.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 12.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 12.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 12.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 11.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 11.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 10.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.0
FF:10164-103B2 76 years, female 15.0
Globus pallidus
Scaled Tags Per Million: 12.2
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 11.9
Nucleus accumbens
Scaled Tags Per Million: 26.5
FF:10037-101F1 23-56 years, mixed 26.5
Putamen
Scaled Tags Per Million: 13.7
FF:10176-103C5 60 years, female 13.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 5.0
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.3
Sample A Female 4.8
Sample B Female 5.7
Sample C Male 5.0
Sample D Male 4.3
Putamen
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 3.7
Sample C Male 4.1
Sample D Male 4.9
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.3
Sample A Female 4.7
Sample B Female 5.5
Sample C Male 5.6
Sample D Male 4.3
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 4.7
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.2
Sample C Male 4.2
Sample D Male 4.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.5
Sample A Male 1.5
Sample B Male 2.4
Sample C Female 1.8
Sample D Female 1.7
Septum
nTPM: 3.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.2
Sample A Male 4.6
Sample B Male 3.1
Sample C Female 2.6
Sample D Female 2.2
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.8
Sample A Male 4.3
Sample B Male 2.8
Sample C Female 3.4
Sample D Female 2.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
1529 Antisense, RP_Baylor_102995, Mouse strain C57BL/6J (56 days, male) 0.4
1528 Antisense, RP_Baylor_102995, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.4
1529 Antisense, RP_Baylor_102995, Mouse strain C57BL/6J (56 days, male) 0.4
1528 Antisense, RP_Baylor_102995, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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