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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:243.3 nTPM
HPA:243.3 nTPM
GTEx:100.6 nTPM
FANTOM5:119.1 Scaled Tags Per Million
Pig:44.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 243.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 243.3
2565 Male, age 75, midline 276.1
2048 Male, age 55, midline 247.6
1981 Female, age 72, midline 245.5
2816 Male, age 47, midline 236.8
2194 Female, age 79, both hemispheres 210.7
Cervical spinal cord, dorsal horn
nTPM: 227.3
2721 Male, age 90, both hemispheres 245.0
2069 Male, age 47, both hemispheres 235.8
1877 Male, age 55, unknown 232.9
2296 Male, age 66, both hemispheres 231.8
2297 Male, age 75, both hemispheres 211.6
2173 Female, age 72, unknown 206.6
Cervical spinal cord, ventral horn
nTPM: 224.6
2098 Female, age 72, unknown 306.3
2809 Male, age 90, both hemispheres 224.6
2480 Male, age 75, both hemispheres 217.5
2295 Male, age 66, both hemispheres 209.1
2068 Male, age 55, unknown 203.6
2820 Female, age 79, both hemispheres 186.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.6
Samples: 159

Max nTPM: 370.5
Min nTPM: 16.7
Std nTPM: 60.7
Median nTPM: 86.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 370.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 291.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 267.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 266.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 259.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 240.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 237.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 230.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 225.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 215.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 194.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 192.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 190.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 189.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 186.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 178.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 177.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 177.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 175.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 165.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 165.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 163.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 163.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 160.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 159.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 153.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 153.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 150.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 147.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 146.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 146.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 143.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 143.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 138.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 136.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 135.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 132.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 131.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 131.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 130.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 130.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 122.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 120.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 120.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 120.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 120.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 119.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 118.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 117.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 116.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 111.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 109.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 109.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 108.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 106.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 102.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 102.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 101.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 101.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 101.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 101.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 100.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 99.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 98.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 97.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 97.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 95.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 93.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 91.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 91.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 91.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 90.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 90.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 88.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 88.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 86.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 85.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 85.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 85.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 84.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 83.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 81.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 81.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 80.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 79.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 78.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 77.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 74.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 73.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 73.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 72.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 70.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 70.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 69.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 69.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 68.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 68.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 66.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 65.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 63.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 63.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 62.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 61.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 61.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 61.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 61.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 61.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 61.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 61.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 60.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 60.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 57.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 56.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 56.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 55.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 54.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 53.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 52.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 52.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 51.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 50.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 49.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 48.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 48.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 47.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 45.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 45.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 44.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 43.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 43.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 42.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 42.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 40.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 39.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 39.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 38.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 37.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 37.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 36.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 36.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 35.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 35.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 33.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 32.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 28.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 23.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 23.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 22.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 20.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 16.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.1
FF:10159-103A6 76 years, female 172.1
FF:10181-103D1 60 years, female 66.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 40.3
Samples: 4

Max nTPM: 54.2
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 54.2
Sample C Male 42.7
Sample D Male 35.8
Ventral spinal cord
nTPM: 44.6
Samples: 4

Max nTPM: 69.5
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 69.5
Sample C Male 54.7
Sample D Male 31.8

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