BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.0 nTPM
HPA:4.0 nTPM
GTEx:4.8 nTPM
FANTOM5:17.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA041263Antibody HPA043123Antibody HPA046836
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.7
2290 Female, age 72, unknown 4.2
1854 Male, age 80, left hemisphere 4.1
2846 Female, age 79, unknown 4.0
1857 Female, age 85, left hemisphere 3.8
1781 Male, age 74, unknown 3.6
2289 Male, age 61, right hemisphere 3.5
2481 Female, age 94, left hemisphere 3.2
2288 Male, age 75, left hemisphere 3.1
Claustrum
nTPM: 3.0
2645 Female, age 72, unknown 4.0
2198 Male, age 80, both hemispheres 3.2
2568 Male, age 61, both hemispheres 3.2
2392 Female, age 94, both hemispheres 3.1
1956 Male, age 74, unknown 3.0
2284 Female, age 91, both hemispheres 2.9
2292 Female, age 85, both hemispheres 2.8
2196 Female, age 79, unknown 2.7
2491 Male, age 75, both hemispheres 2.2
Globus pallidus, externus
nTPM: 3.3
2567 Female, age 72, unknown 3.7
2646 Male, age 61, right hemisphere 3.5
1996 Male, age 80, right hemisphere 3.4
2772 Female, age 79, unknown 3.1
2395 Male, age 75, both hemispheres 2.6
Globus pallidus, internus
nTPM: 3.1
1818 Male, age 74, unknown 3.6
2037 Male, age 80, right hemisphere 3.5
2111 Female, age 85, right hemisphere 3.0
2287 Male, age 75, right hemisphere 2.9
2566 Female, age 72, unknown 2.9
2778 Female, age 91, both hemispheres 2.8
2483 Female, age 94, right hemisphere 2.7
Nucleus accumbens
nTPM: 3.8
2824 Male, age 61, right hemisphere 4.5
1783 Male, age 74, unknown 4.3
1856 Female, age 91, right hemisphere 4.1
1806 Female, age 85, left hemisphere 4.0
2732 Male, age 80, right hemisphere 3.8
2698 Female, age 72, unknown 3.5
2286 Male, age 75, left hemisphere 3.2
2391 Female, age 94, left hemisphere 3.0
Nucleus basalis of Meynert
nTPM: 3.6
2393 Male, age 80, right hemisphere 4.2
2569 Male, age 61, both hemispheres 3.7
2484 Female, age 94, left hemisphere 3.5
2821 Male, age 75, both hemispheres 3.0
Nucleus of the diagonal band
nTPM: 3.0
1979 Male, age 74, unknown 3.5
1812 Female, age 91, both hemispheres 3.1
2775 Male, age 80, right hemisphere 3.0
2029 Male, age 61, right hemisphere 2.8
2195 Female, age 85, both hemispheres 2.8
Olfactory tubercle
nTPM: 3.2
2487 Female, age 94, left hemisphere 3.6
1998 Female, age 91, both hemispheres 3.4
1846 Male, age 80, right hemisphere 3.0
2856 Male, age 75, right hemisphere 2.9
Putamen
nTPM: 4.0
1838 Male, age 80, right hemisphere 4.8
2489 Female, age 72, unknown 4.8
2466 Female, age 79, unknown 4.1
2647 Male, age 75, left hemisphere 4.0
1937 Female, age 91, right hemisphere 3.9
2482 Female, age 94, left hemisphere 3.3
1829 Male, age 74, unknown 3.2
Septal nuclei
nTPM: 3.3
2059 Female, age 85, both hemispheres 4.0
2199 Male, age 80, right hemisphere 3.8
2394 Male, age 61, left hemisphere 3.4
2629 Female, age 94, right hemisphere 3.3
2009 Female, age 91, both hemispheres 3.2
1960 Male, age 74, unknown 3.1
2031 Female, age 72, unknown 2.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.6
Samples: 246

Max nTPM: 8.7
Min nTPM: 1.5
Std nTPM: 1.3
Median nTPM: 4.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 8.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 7.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 7.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 7.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 7.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 7.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 7.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 7.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 7.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 7.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 7.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.8
Samples: 246

Max nTPM: 8.6
Min nTPM: 1.6
Std nTPM: 1.3
Median nTPM: 4.8
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 8.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 8.2
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 7.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 7.3
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 7.2
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 7.2
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 7.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 7.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 7.1
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 7.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 7.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 4.6
Samples: 205

Max nTPM: 8.6
Min nTPM: 1.1
Std nTPM: 1.4
Median nTPM: 4.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 8.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 7.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 7.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 7.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 7.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 7.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 7.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 7.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 7.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 6.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 6.9
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.7
FF:10164-103B2 76 years, female 12.7
Globus pallidus
Scaled Tags Per Million: 10.6
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 8.6
Nucleus accumbens
Scaled Tags Per Million: 15.6
FF:10037-101F1 23-56 years, mixed 15.6
Putamen
Scaled Tags Per Million: 17.3
FF:10176-103C5 60 years, female 17.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.