BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:32.8 nTPM
HPA:32.8 nTPM
GTEx:33.5 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:66.5 nTPM
Allen mouse:9.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA010025
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.9
2481 Female, age 94, left hemisphere 32.5
1854 Male, age 80, left hemisphere 30.3
2288 Male, age 75, left hemisphere 29.8
1857 Female, age 85, left hemisphere 29.6
2289 Male, age 61, right hemisphere 29.5
2290 Female, age 72, unknown 29.5
2846 Female, age 79, unknown 29.3
1781 Male, age 74, unknown 28.7
Claustrum
nTPM: 29.2
1956 Male, age 74, unknown 30.9
2292 Female, age 85, both hemispheres 30.8
2196 Female, age 79, unknown 29.8
2392 Female, age 94, both hemispheres 29.5
2198 Male, age 80, both hemispheres 29.0
2491 Male, age 75, both hemispheres 28.7
2568 Male, age 61, both hemispheres 28.6
2284 Female, age 91, both hemispheres 27.8
2645 Female, age 72, unknown 27.8
Globus pallidus, externus
nTPM: 32.4
1996 Male, age 80, right hemisphere 35.4
2772 Female, age 79, unknown 33.9
2646 Male, age 61, right hemisphere 32.3
2395 Male, age 75, both hemispheres 32.1
2567 Female, age 72, unknown 28.5
Globus pallidus, internus
nTPM: 32.8
2287 Male, age 75, right hemisphere 35.0
2778 Female, age 91, both hemispheres 34.1
2111 Female, age 85, right hemisphere 33.6
2037 Male, age 80, right hemisphere 32.7
1818 Male, age 74, unknown 32.4
2483 Female, age 94, right hemisphere 32.0
2566 Female, age 72, unknown 29.9
Nucleus accumbens
nTPM: 30.2
2391 Female, age 94, left hemisphere 32.0
2732 Male, age 80, right hemisphere 31.1
1806 Female, age 85, left hemisphere 31.0
2286 Male, age 75, left hemisphere 30.9
2698 Female, age 72, unknown 30.0
1856 Female, age 91, right hemisphere 29.0
2824 Male, age 61, right hemisphere 28.8
1783 Male, age 74, unknown 28.7
Nucleus basalis of Meynert
nTPM: 30.3
2569 Male, age 61, both hemispheres 31.3
2821 Male, age 75, both hemispheres 30.2
2484 Female, age 94, left hemisphere 30.0
2393 Male, age 80, right hemisphere 29.7
Nucleus of the diagonal band
nTPM: 28.7
1812 Female, age 91, both hemispheres 29.9
1979 Male, age 74, unknown 29.2
2775 Male, age 80, right hemisphere 28.9
2029 Male, age 61, right hemisphere 27.8
2195 Female, age 85, both hemispheres 27.8
Olfactory tubercle
nTPM: 28.5
1846 Male, age 80, right hemisphere 29.4
2856 Male, age 75, right hemisphere 28.5
2487 Female, age 94, left hemisphere 28.0
1998 Female, age 91, both hemispheres 27.9
Putamen
nTPM: 29.0
2482 Female, age 94, left hemisphere 32.1
1937 Female, age 91, right hemisphere 29.8
1829 Male, age 74, unknown 28.8
2647 Male, age 75, left hemisphere 28.5
2466 Female, age 79, unknown 28.4
2489 Female, age 72, unknown 28.1
1838 Male, age 80, right hemisphere 27.3
Septal nuclei
nTPM: 29.1
2199 Male, age 80, right hemisphere 30.8
2031 Female, age 72, unknown 29.4
2629 Female, age 94, right hemisphere 29.4
2394 Male, age 61, left hemisphere 29.1
2059 Female, age 85, both hemispheres 28.6
1960 Male, age 74, unknown 28.2
2009 Female, age 91, both hemispheres 28.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.6
Samples: 246

Max nTPM: 66.9
Min nTPM: 14.6
Std nTPM: 7.5
Median nTPM: 29.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 66.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 54.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 51.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 51.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 50.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 49.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 48.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 48.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 46.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 46.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.3
Samples: 246

Max nTPM: 79.9
Min nTPM: 18.0
Std nTPM: 10.1
Median nTPM: 27.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 79.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 67.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 65.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 65.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 63.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 59.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 58.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 56.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 54.7
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Brain - Putamen (basal ganglia)
Average nTPM: 33.5
Samples: 205

Max nTPM: 92.4
Min nTPM: 18.1
Std nTPM: 9.8
Median nTPM: 31.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 92.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 59.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 58.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 57.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 57.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 56.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 56.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 55.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 53.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 53.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 52.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.6
FF:10164-103B2 76 years, female 39.6
Globus pallidus
Scaled Tags Per Million: 49.2
FF:10175-103C4 60 years, female 55.2
FF:10161-103A8 76 years, female 43.1
Nucleus accumbens
Scaled Tags Per Million: 32.0
FF:10037-101F1 23-56 years, mixed 32.0
Putamen
Scaled Tags Per Million: 33.3
FF:10176-103C5 60 years, female 33.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Caudate
nTPM: 13.2
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 13.6
Sample C Male 14.1
Sample D Male 12.7
Putamen
nTPM: 18.7
Samples: 4

Max nTPM: 22.6
Min nTPM: 14.3
Sample A Female 22.6
Sample B Female 14.3
Sample C Male 20.6
Sample D Male 17.3
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 15.4
Sample C Male 22.0
Sample D Male 20.0
Ventral pallidum
nTPM: 16.5
Samples: 4

Max nTPM: 20.6
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 17.0
Sample C Male 20.6
Sample D Male 16.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66.5
Samples: 4

Max nTPM: 67.8
Min nTPM: 63.9
Sample A Male 67.4
Sample B Male 63.9
Sample C Female 67.8
Sample D Female 66.9
Septum
nTPM: 66.5
Samples: 4

Max nTPM: 73.9
Min nTPM: 56.3
Sample A Male 56.3
Sample B Male 68.1
Sample C Female 73.9
Sample D Female 67.8
Ventral forebrain
nTPM: 64.0
Samples: 4

Max nTPM: 70.8
Min nTPM: 55.3
Sample A Male 65.8
Sample B Male 55.3
Sample C Female 70.8
Sample D Female 64.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.2
69838758 Antisense, RP_050324_01_G11, Mouse strain C57BL/6J (56 days, male) 9.2
Pallidum
Expression energy: 7.6
69838758 Antisense, RP_050324_01_G11, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

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