We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LGALS3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • LGALS3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:853.4 nTPM
HPA:853.4 nTPM
GTEx:394.3 nTPM
FANTOM5:1676.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA003162Antibody CAB005191
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells Medium-
Paneth cells Medium-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 853.4
overview
Male, age 65
Small intestine sample 232
nTPM: 799.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1189.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 626.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 797.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 394.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 394.3
Samples: 187

Max nTPM: 1813.5
Min nTPM: 32.5
Std nTPM: 323.8
Median nTPM: 293.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1813.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1600.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1379.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1304.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1265.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1127.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1067.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1058.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1049.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1035.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 955.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 948.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 929.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 928.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 896.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 889.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 856.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 837.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 823.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 817.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 805.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 798.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 792.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 779.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 771.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 770.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 760.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 759.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 758.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 751.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 750.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 738.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 717.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 711.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 701.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 696.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 685.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 676.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 662.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 641.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 623.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 622.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 612.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 599.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 577.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 570.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 565.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 564.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 562.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 550.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 536.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 520.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 506.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 503.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 502.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 495.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 479.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 479.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 477.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 473.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 468.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 455.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 449.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 439.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 437.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 431.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 415.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 415.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 414.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 411.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 406.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 388.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 388.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 375.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 371.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 370.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 368.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 364.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 363.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 363.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 361.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 354.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 353.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 348.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 336.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 331.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 329.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 313.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 309.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 302.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 300.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 298.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 297.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 293.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 292.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 283.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 282.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 268.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 260.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 259.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 257.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 256.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 253.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 241.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 237.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 237.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 232.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 224.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 221.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 220.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 217.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 209.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 205.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 202.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 202.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 199.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 199.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 192.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 188.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 185.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 185.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 182.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 181.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 180.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 178.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 178.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 172.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 171.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 170.1
GTEX-1192X-2526-SM-59868 50-59 years, male 169.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 168.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 162.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 157.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 155.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 150.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 147.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 146.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 139.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 138.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 134.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 130.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 129.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 129.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 129.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 128.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 124.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 122.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 121.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 119.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 117.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 113.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 111.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 111.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 111.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 110.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 110.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 109.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 108.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 108.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 107.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 106.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 106.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 104.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 103.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 101.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 100.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 98.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 97.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 94.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 92.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 92.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 92.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 89.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 87.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 85.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 85.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 84.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 83.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 82.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 80.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 79.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 79.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 78.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 69.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 66.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 47.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 32.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1676.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1676.8
FF:10024-101D6 15,40,85 years, mixed 1676.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.