MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:251.8 nTPM
HPA:251.8 nTPM
GTEx:187.1 nTPM
FANTOM5:270.2 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:30.0 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 251.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 251.8
2219 Male, age 76, both hemispheres 390.0
2586 Male, age 75, left hemisphere 282.6
2411 Female, age 72, unknown 235.5
2666 Male, age 74, left hemisphere 232.6
1827 Male, age 72, unknown 231.2
1870 Female, age 42, unknown 230.9
2019 Male, age 18, unknown 230.1
2828 Female, age 72, unknown 229.6
1830 Male, age 51, unknown 228.0
1833 Male, age 53, unknown 227.5
Dorsal raphe nucleus
nTPM: 232.6
2016 Female, age 72, unknown 246.0
2298 Female, age 72, unknown 241.6
2047 Male, age 72, unknown 235.4
1828 Male, age 53, unknown 229.1
2750 Male, age 76, both hemispheres 210.8
Inferior colliculus
nTPM: 224.7
1848 Female, age 42, unknown 227.7
2097 Female, age 72, unknown 225.4
2849 Male, age 72, unknown 223.4
1890 Male, age 53, unknown 222.3
Median raphe nucleus
nTPM: 231.0
2220 Male, age 76, midline 231.0
Pedunculopontine tegmental nucleus
nTPM: 234.4
2334 Male, age 80, both hemispheres 239.3
2338 Male, age 61, both hemispheres 236.1
1921 Female, age 85, both hemispheres 227.8
Periaquaductal grey, anterior
nTPM: 229.5
1947 Male, age 18, unknown 236.9
1795 Male, age 51, unknown 232.7
2502 Female, age 75, unknown 218.8
Periaquaductal grey, dorsal
nTPM: 226.6
1831 Male, age 72, unknown 230.8
1840 Male, age 53, unknown 230.5
2464 Female, age 72, unknown 226.2
2850 Male, age 76, both hemispheres 218.7
Periaquaductal grey, lateral
nTPM: 224.4
2272 Male, age 74, both hemispheres 226.9
2053 Male, age 18, unknown 225.9
2140 Male, age 76, both hemispheres 220.5
Pretectal area
nTPM: 232.4
2667 Female, age 75, unknown 247.3
1817 Female, age 42, unknown 238.9
2407 Male, age 75, both hemispheres 237.7
1944 Female, age 72, unknown 234.7
1816 Male, age 51, unknown 234.3
2007 Male, age 72, unknown 233.8
1815 Male, age 53, unknown 233.1
2825 Male, age 18, unknown 231.2
2224 Female, age 72, unknown 230.6
2273 Male, age 74, both hemispheres 221.8
2316 Male, age 76, right hemisphere 213.3
Red nucleus
nTPM: 228.0
2584 Male, age 75, left hemisphere 238.8
1865 Male, age 51, unknown 232.5
1821 Female, age 72, unknown 231.9
1954 Female, age 42, unknown 230.7
2503 Female, age 72, unknown 228.5
2588 Male, age 74, left hemisphere 228.5
2785 Male, age 18, unknown 228.4
1904 Male, age 53, unknown 227.2
2769 Male, age 72, unknown 227.2
2227 Male, age 72, unknown 226.8
2725 Female, age 75, unknown 224.3
2823 Male, age 76, right hemisphere 210.6
Substantia nigra
nTPM: 238.8
1851 Male, age 51, unknown 246.9
2409 Female, age 72, unknown 242.9
2241 Male, age 72, unknown 242.5
1916 Female, age 42, unknown 241.3
2583 Male, age 75, right hemisphere 241.0
2699 Male, age 18, unknown 239.5
1889 Female, age 72, unknown 237.7
1941 Male, age 53, unknown 234.2
2665 Male, age 74, both hemispheres 231.1
2590 Female, age 75, unknown 231.0
Superior colliculus
nTPM: 232.9
1796 Male, age 53, unknown 259.4
2668 Female, age 75, unknown 241.7
2664 Male, age 75, both hemispheres 234.9
2261 Male, age 18, unknown 232.6
2087 Female, age 72, unknown 232.2
1995 Male, age 72, unknown 230.3
1913 Female, age 42, unknown 228.4
1839 Male, age 51, unknown 227.1
2587 Male, age 74, left hemisphere 222.9
1895 Male, age 76, right hemisphere 219.6
Ventral tegmental area
nTPM: 230.3
2410 Female, age 72, unknown 241.4
1915 Female, age 42, unknown 240.4
1942 Male, age 51, unknown 229.8
2223 Female, age 72, unknown 229.7
2021 Male, age 53, unknown 225.3
2218 Male, age 76, both hemispheres 215.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 187.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 187.1
Samples: 139

Max nTPM: 2207.9
Min nTPM: 34.3
Std nTPM: 288.0
Median nTPM: 90.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2207.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1714.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1312.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 888.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 794.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 793.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 753.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 680.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 659.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 516.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 510.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 270.2
FF:10158-103A5 76 years, female 270.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 57.7
Min nTPM: 30.8
Sample A Female 57.7
Sample B Female 30.8
Sample C Male 41.4
Sample D Male 37.4
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 40.5
Min nTPM: 30.4
Sample B Female 30.4
Sample C Male 40.5
Sample D Male 36.9
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 48.8
Min nTPM: 29.6
Sample A Female 48.8
Sample B Female 29.6
Sample C Male 39.5
Sample D Male 42.4
Superior colliculi
nTPM: 43.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 39.6
Sample A Female 47.1
Sample B Female 39.6
Sample C Male 41.9
Sample D Male 47.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 28.4
Sample A Male 28.4
Sample B Male 29.7
Sample C Female 31.7
Sample D Female 30.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
71836748 Antisense, RP_051017_02_A03, Mouse strain C57BL/6J (56 days, male) 8.7
68269050 Antisense, RP_041208_01_G01, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.