MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:128.4 nTPM
HPA:128.4 nTPM
GTEx:83.2 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Pig:173.3 nTPM
Mouse:461.4 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.4
2586 Male, age 75, left hemisphere 149.5
1827 Male, age 72, unknown 97.4
2828 Female, age 72, unknown 91.7
1833 Male, age 53, unknown 89.7
2666 Male, age 74, left hemisphere 79.1
1870 Female, age 42, unknown 75.4
2219 Male, age 76, both hemispheres 68.5
2411 Female, age 72, unknown 66.1
1830 Male, age 51, unknown 65.4
2019 Male, age 18, unknown 51.6
Dorsal raphe nucleus
nTPM: 91.7
1828 Male, age 53, unknown 120.6
2016 Female, age 72, unknown 110.9
2047 Male, age 72, unknown 101.6
2298 Female, age 72, unknown 77.0
2750 Male, age 76, both hemispheres 48.3
Inferior colliculus
nTPM: 128.4
1848 Female, age 42, unknown 169.6
2849 Male, age 72, unknown 148.9
1890 Male, age 53, unknown 103.2
2097 Female, age 72, unknown 91.9
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Pedunculopontine tegmental nucleus
nTPM: 54.2
1921 Female, age 85, both hemispheres 82.2
2334 Male, age 80, both hemispheres 55.5
2338 Male, age 61, both hemispheres 25.1
Periaquaductal grey, anterior
nTPM: 93.3
2502 Female, age 75, unknown 103.1
1947 Male, age 18, unknown 90.0
1795 Male, age 51, unknown 86.8
Periaquaductal grey, dorsal
nTPM: 98.9
1840 Male, age 53, unknown 143.4
2464 Female, age 72, unknown 115.2
2850 Male, age 76, both hemispheres 73.7
1831 Male, age 72, unknown 63.2
Periaquaductal grey, lateral
nTPM: 81.1
2053 Male, age 18, unknown 100.9
2140 Male, age 76, both hemispheres 87.5
2272 Male, age 74, both hemispheres 54.8
Pretectal area
nTPM: 91.9
1944 Female, age 72, unknown 114.0
1816 Male, age 51, unknown 111.9
1817 Female, age 42, unknown 107.9
2667 Female, age 75, unknown 106.6
2224 Female, age 72, unknown 106.5
2825 Male, age 18, unknown 106.0
1815 Male, age 53, unknown 80.2
2316 Male, age 76, right hemisphere 78.7
2007 Male, age 72, unknown 75.9
2273 Male, age 74, both hemispheres 62.6
2407 Male, age 75, both hemispheres 61.1
Red nucleus
nTPM: 83.2
2769 Male, age 72, unknown 104.6
2227 Male, age 72, unknown 104.4
1821 Female, age 72, unknown 104.2
2588 Male, age 74, left hemisphere 102.7
2503 Female, age 72, unknown 101.1
1954 Female, age 42, unknown 98.0
1904 Male, age 53, unknown 78.2
2823 Male, age 76, right hemisphere 78.1
1865 Male, age 51, unknown 67.1
2725 Female, age 75, unknown 66.4
2785 Male, age 18, unknown 48.4
2584 Male, age 75, left hemisphere 45.4
Substantia nigra
nTPM: 100.6
2699 Male, age 18, unknown 143.6
1916 Female, age 42, unknown 141.0
2665 Male, age 74, both hemispheres 117.9
1889 Female, age 72, unknown 102.8
1851 Male, age 51, unknown 97.3
2241 Male, age 72, unknown 97.2
2409 Female, age 72, unknown 93.5
2590 Female, age 75, unknown 81.5
2583 Male, age 75, right hemisphere 76.5
1941 Male, age 53, unknown 54.6
Superior colliculus
nTPM: 86.8
2664 Male, age 75, both hemispheres 115.1
1839 Male, age 51, unknown 106.1
2087 Female, age 72, unknown 101.1
2261 Male, age 18, unknown 100.4
1796 Male, age 53, unknown 93.6
2668 Female, age 75, unknown 89.7
1895 Male, age 76, right hemisphere 86.0
2587 Male, age 74, left hemisphere 84.0
1995 Male, age 72, unknown 50.2
1913 Female, age 42, unknown 41.7
Ventral tegmental area
nTPM: 68.7
2410 Female, age 72, unknown 99.1
1915 Female, age 42, unknown 95.3
1942 Male, age 51, unknown 62.7
2218 Male, age 76, both hemispheres 61.3
2021 Male, age 53, unknown 58.7
2223 Female, age 72, unknown 34.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.2
Samples: 139

Max nTPM: 400.4
Min nTPM: 1.5
Std nTPM: 71.8
Median nTPM: 62.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 400.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 313.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 292.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 290.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 264.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 256.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 234.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 221.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 221.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 209.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 192.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.1
FF:10158-103A5 76 years, female 15.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 173.3
Pig sample Sample description nTPM
Midbrain
nTPM: 136.1
Samples: 4

Max nTPM: 178.1
Min nTPM: 23.5
Sample A Female 23.5
Sample B Female 178.1
Sample C Male 167.9
Sample D Male 174.7
Periaqueductal gray
nTPM: 173.3
Samples: 3

Max nTPM: 202.5
Min nTPM: 144.4
Sample B Female 202.5
Sample C Male 173.1
Sample D Male 144.4
Substantia nigra
nTPM: 131.9
Samples: 4

Max nTPM: 159.7
Min nTPM: 99.4
Sample A Female 139.2
Sample B Female 99.4
Sample C Male 159.7
Sample D Male 129.4
Superior colliculi
nTPM: 128.1
Samples: 4

Max nTPM: 164.6
Min nTPM: 58.0
Sample A Female 164.6
Sample B Female 58.0
Sample C Male 138.2
Sample D Male 151.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 461.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 461.4
Samples: 4

Max nTPM: 477.1
Min nTPM: 445.8
Sample A Male 477.1
Sample B Male 455.8
Sample C Female 445.8
Sample D Female 466.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
69672725 Antisense, RP_050428_04_D04, Mouse strain C57BL/6J (56 days, male) 10.8
72472802 Antisense, RP_051101_02_F06, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.