BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:21.6 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Mouse:40.3 nTPM
Allen mouse:5.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038156Antibody CAB032985
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.4
1781 Male, age 74, unknown 31.5
1854 Male, age 80, left hemisphere 30.7
2846 Female, age 79, unknown 30.7
2289 Male, age 61, right hemisphere 30.4
1857 Female, age 85, left hemisphere 30.3
2481 Female, age 94, left hemisphere 30.3
2290 Female, age 72, unknown 29.9
2288 Male, age 75, left hemisphere 29.5
Claustrum
nTPM: 31.2
2491 Male, age 75, both hemispheres 32.8
2568 Male, age 61, both hemispheres 32.0
2198 Male, age 80, both hemispheres 31.9
2392 Female, age 94, both hemispheres 31.9
2284 Female, age 91, both hemispheres 31.3
2645 Female, age 72, unknown 30.8
2196 Female, age 79, unknown 30.4
2292 Female, age 85, both hemispheres 30.0
1956 Male, age 74, unknown 29.7
Globus pallidus, externus
nTPM: 29.8
2395 Male, age 75, both hemispheres 30.7
2772 Female, age 79, unknown 30.4
2646 Male, age 61, right hemisphere 30.3
1996 Male, age 80, right hemisphere 29.6
2567 Female, age 72, unknown 27.9
Globus pallidus, internus
nTPM: 30.4
2778 Female, age 91, both hemispheres 31.9
2287 Male, age 75, right hemisphere 31.1
2037 Male, age 80, right hemisphere 30.4
2566 Female, age 72, unknown 30.2
1818 Male, age 74, unknown 30.0
2111 Female, age 85, right hemisphere 29.7
2483 Female, age 94, right hemisphere 29.7
Nucleus accumbens
nTPM: 30.6
1783 Male, age 74, unknown 31.8
2286 Male, age 75, left hemisphere 31.7
2824 Male, age 61, right hemisphere 31.5
1856 Female, age 91, right hemisphere 31.1
1806 Female, age 85, left hemisphere 30.6
2391 Female, age 94, left hemisphere 29.7
2732 Male, age 80, right hemisphere 29.4
2698 Female, age 72, unknown 29.3
Nucleus basalis of Meynert
nTPM: 29.9
2821 Male, age 75, both hemispheres 30.9
2569 Male, age 61, both hemispheres 29.9
2484 Female, age 94, left hemisphere 29.7
2393 Male, age 80, right hemisphere 29.1
Nucleus of the diagonal band
nTPM: 31.6
2775 Male, age 80, right hemisphere 33.0
1812 Female, age 91, both hemispheres 32.0
2029 Male, age 61, right hemisphere 31.9
2195 Female, age 85, both hemispheres 31.5
1979 Male, age 74, unknown 29.5
Olfactory tubercle
nTPM: 32.3
1998 Female, age 91, both hemispheres 33.4
1846 Male, age 80, right hemisphere 33.0
2487 Female, age 94, left hemisphere 32.2
2856 Male, age 75, right hemisphere 30.6
Putamen
nTPM: 30.3
2466 Female, age 79, unknown 31.6
2647 Male, age 75, left hemisphere 31.3
1838 Male, age 80, right hemisphere 30.8
1937 Female, age 91, right hemisphere 29.9
2482 Female, age 94, left hemisphere 29.9
1829 Male, age 74, unknown 29.7
2489 Female, age 72, unknown 28.6
Septal nuclei
nTPM: 31.5
2031 Female, age 72, unknown 33.9
1960 Male, age 74, unknown 33.6
2009 Female, age 91, both hemispheres 32.2
2629 Female, age 94, right hemisphere 30.9
2059 Female, age 85, both hemispheres 30.7
2199 Male, age 80, right hemisphere 29.8
2394 Male, age 61, left hemisphere 29.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 39.3
Min nTPM: 12.2
Std nTPM: 3.9
Median nTPM: 20.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 39.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 33.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 32.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 30.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 30.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 29.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 29.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 28.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 28.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 28.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 28.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.6
Samples: 246

Max nTPM: 41.1
Min nTPM: 10.5
Std nTPM: 3.8
Median nTPM: 21.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 41.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 32.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 31.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 30.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 30.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 29.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 29.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 29.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 28.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 28.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 28.3
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Brain - Putamen (basal ganglia)
Average nTPM: 21.2
Samples: 205

Max nTPM: 43.6
Min nTPM: 11.6
Std nTPM: 4.2
Median nTPM: 20.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 43.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 34.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 31.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 30.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 30.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 30.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 29.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 29.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 28.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 28.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 28.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.7
FF:10164-103B2 76 years, female 40.7
Globus pallidus
Scaled Tags Per Million: 37.2
FF:10175-103C4 60 years, female 40.2
FF:10161-103A8 76 years, female 34.1
Nucleus accumbens
Scaled Tags Per Million: 43.1
FF:10037-101F1 23-56 years, mixed 43.1
Putamen
Scaled Tags Per Million: 41.5
FF:10176-103C5 60 years, female 41.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.2
Samples: 4

Max nTPM: 42.0
Min nTPM: 35.8
Sample A Male 40.7
Sample B Male 42.0
Sample C Female 38.2
Sample D Female 35.8
Septum
nTPM: 38.0
Samples: 4

Max nTPM: 46.7
Min nTPM: 32.5
Sample A Male 46.7
Sample B Male 35.9
Sample C Female 36.9
Sample D Female 32.5
Ventral forebrain
nTPM: 40.3
Samples: 4

Max nTPM: 42.7
Min nTPM: 33.9
Sample A Male 42.0
Sample B Male 33.9
Sample C Female 42.5
Sample D Female 42.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
74990537 Antisense, RP_060410_01_C12, Mouse strain C57BL/6J (56 days, male) 5.3
Pallidum
Expression energy: 4.1
74990537 Antisense, RP_060410_01_C12, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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