MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:39.5 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:54.0 nTPM
Mouse:144.0 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
1827 Male, age 72, unknown 30.8
2411 Female, age 72, unknown 30.7
2219 Male, age 76, both hemispheres 30.5
2019 Male, age 18, unknown 30.2
1833 Male, age 53, unknown 28.0
2828 Female, age 72, unknown 28.0
1870 Female, age 42, unknown 27.7
2666 Male, age 74, left hemisphere 27.3
1830 Male, age 51, unknown 27.2
2586 Male, age 75, left hemisphere 25.5
Dorsal raphe nucleus
nTPM: 29.8
2047 Male, age 72, unknown 31.8
1828 Male, age 53, unknown 31.6
2750 Male, age 76, both hemispheres 29.8
2298 Female, age 72, unknown 29.1
2016 Female, age 72, unknown 26.5
Inferior colliculus
nTPM: 28.4
2097 Female, age 72, unknown 29.6
1848 Female, age 42, unknown 28.7
1890 Male, age 53, unknown 27.9
2849 Male, age 72, unknown 27.2
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Pedunculopontine tegmental nucleus
nTPM: 30.4
1921 Female, age 85, both hemispheres 30.8
2334 Male, age 80, both hemispheres 30.8
2338 Male, age 61, both hemispheres 29.5
Periaquaductal grey, anterior
nTPM: 28.6
1947 Male, age 18, unknown 31.8
1795 Male, age 51, unknown 28.3
2502 Female, age 75, unknown 25.6
Periaquaductal grey, dorsal
nTPM: 26.9
2850 Male, age 76, both hemispheres 27.9
1840 Male, age 53, unknown 26.9
1831 Male, age 72, unknown 26.5
2464 Female, age 72, unknown 26.0
Periaquaductal grey, lateral
nTPM: 27.2
2272 Male, age 74, both hemispheres 29.4
2053 Male, age 18, unknown 26.2
2140 Male, age 76, both hemispheres 26.1
Pretectal area
nTPM: 30.3
1817 Female, age 42, unknown 34.4
1944 Female, age 72, unknown 32.9
1816 Male, age 51, unknown 32.7
2667 Female, age 75, unknown 32.5
2007 Male, age 72, unknown 32.3
1815 Male, age 53, unknown 30.5
2224 Female, age 72, unknown 28.5
2273 Male, age 74, both hemispheres 28.4
2407 Male, age 75, both hemispheres 27.8
2825 Male, age 18, unknown 27.3
2316 Male, age 76, right hemisphere 26.3
Red nucleus
nTPM: 28.8
2725 Female, age 75, unknown 34.0
1821 Female, age 72, unknown 33.4
2503 Female, age 72, unknown 28.7
1865 Male, age 51, unknown 28.5
2785 Male, age 18, unknown 28.4
1954 Female, age 42, unknown 28.3
2588 Male, age 74, left hemisphere 28.2
2823 Male, age 76, right hemisphere 28.1
2769 Male, age 72, unknown 27.3
1904 Male, age 53, unknown 27.2
2227 Male, age 72, unknown 26.7
2584 Male, age 75, left hemisphere 26.7
Substantia nigra
nTPM: 34.2
1916 Female, age 42, unknown 43.3
2241 Male, age 72, unknown 36.9
1941 Male, age 53, unknown 36.6
1851 Male, age 51, unknown 35.8
1889 Female, age 72, unknown 34.8
2409 Female, age 72, unknown 34.1
2699 Male, age 18, unknown 33.2
2590 Female, age 75, unknown 30.5
2665 Male, age 74, both hemispheres 29.6
2583 Male, age 75, right hemisphere 27.2
Superior colliculus
nTPM: 27.7
2087 Female, age 72, unknown 30.4
1895 Male, age 76, right hemisphere 30.0
2587 Male, age 74, left hemisphere 29.8
1796 Male, age 53, unknown 29.3
1839 Male, age 51, unknown 27.9
2261 Male, age 18, unknown 27.5
2668 Female, age 75, unknown 26.8
1913 Female, age 42, unknown 26.4
1995 Male, age 72, unknown 24.7
2664 Male, age 75, both hemispheres 24.4
Ventral tegmental area
nTPM: 31.2
2410 Female, age 72, unknown 35.2
2218 Male, age 76, both hemispheres 34.7
1915 Female, age 42, unknown 34.0
1942 Male, age 51, unknown 28.4
2021 Male, age 53, unknown 27.5
2223 Female, age 72, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 86.1
Min nTPM: 22.1
Std nTPM: 11.9
Median nTPM: 37.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 83.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 80.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 75.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 63.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 59.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 57.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 56.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.0
Pig sample Sample description nTPM
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 64.3
Min nTPM: 42.3
Sample A Female 42.3
Sample B Female 42.3
Sample C Male 64.3
Sample D Male 51.0
Periaqueductal gray
nTPM: 38.8
Samples: 3

Max nTPM: 42.2
Min nTPM: 33.6
Sample B Female 40.5
Sample C Male 42.2
Sample D Male 33.6
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 59.6
Min nTPM: 37.9
Sample A Female 57.9
Sample B Female 40.0
Sample C Male 59.6
Sample D Male 37.9
Superior colliculi
nTPM: 54.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 43.2
Sample A Female 52.9
Sample B Female 43.2
Sample C Male 67.9
Sample D Male 52.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 144.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 144.0
Samples: 4

Max nTPM: 146.9
Min nTPM: 136.4
Sample A Male 136.4
Sample B Male 146.5
Sample C Female 146.1
Sample D Female 146.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69735449 Antisense, RP_050503_02_H01, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.