MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA:9.9 nTPM
GTEx:10.5 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:23.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.4
2019 Male, age 18, unknown 11.1
1830 Male, age 51, unknown 10.8
1833 Male, age 53, unknown 10.8
2411 Female, age 72, unknown 10.4
1870 Female, age 42, unknown 9.9
1827 Male, age 72, unknown 8.7
2666 Male, age 74, left hemisphere 8.6
2219 Male, age 76, both hemispheres 8.5
2586 Male, age 75, left hemisphere 8.1
2828 Female, age 72, unknown 6.7
Dorsal raphe nucleus
nTPM: 9.6
1828 Male, age 53, unknown 10.9
2750 Male, age 76, both hemispheres 10.8
2047 Male, age 72, unknown 9.6
2016 Female, age 72, unknown 8.9
2298 Female, age 72, unknown 7.8
Inferior colliculus
nTPM: 9.9
1848 Female, age 42, unknown 10.7
1890 Male, age 53, unknown 9.8
2849 Male, age 72, unknown 9.6
2097 Female, age 72, unknown 9.5
Median raphe nucleus
nTPM: 9.6
2220 Male, age 76, midline 9.6
Pedunculopontine tegmental nucleus
nTPM: 9.8
2334 Male, age 80, both hemispheres 10.5
1921 Female, age 85, both hemispheres 9.5
2338 Male, age 61, both hemispheres 9.3
Periaquaductal grey, anterior
nTPM: 9.2
1947 Male, age 18, unknown 10.4
2502 Female, age 75, unknown 10.0
1795 Male, age 51, unknown 7.2
Periaquaductal grey, dorsal
nTPM: 8.8
2464 Female, age 72, unknown 9.5
2850 Male, age 76, both hemispheres 9.1
1840 Male, age 53, unknown 8.7
1831 Male, age 72, unknown 7.9
Periaquaductal grey, lateral
nTPM: 7.7
2140 Male, age 76, both hemispheres 8.2
2272 Male, age 74, both hemispheres 8.1
2053 Male, age 18, unknown 6.8
Pretectal area
nTPM: 8.5
2007 Male, age 72, unknown 9.4
2224 Female, age 72, unknown 9.1
1817 Female, age 42, unknown 9.0
1944 Female, age 72, unknown 9.0
2316 Male, age 76, right hemisphere 8.9
1816 Male, age 51, unknown 8.3
2273 Male, age 74, both hemispheres 8.3
1815 Male, age 53, unknown 8.1
2825 Male, age 18, unknown 7.9
2667 Female, age 75, unknown 7.7
2407 Male, age 75, both hemispheres 7.4
Red nucleus
nTPM: 9.7
1821 Female, age 72, unknown 11.6
1954 Female, age 42, unknown 10.6
2227 Male, age 72, unknown 10.4
2823 Male, age 76, right hemisphere 10.1
2769 Male, age 72, unknown 9.9
1865 Male, age 51, unknown 9.8
2785 Male, age 18, unknown 9.6
1904 Male, age 53, unknown 9.1
2725 Female, age 75, unknown 9.1
2503 Female, age 72, unknown 8.8
2588 Male, age 74, left hemisphere 8.6
2584 Male, age 75, left hemisphere 8.3
Substantia nigra
nTPM: 9.6
1941 Male, age 53, unknown 11.2
2241 Male, age 72, unknown 11.0
1916 Female, age 42, unknown 10.8
2409 Female, age 72, unknown 9.7
1889 Female, age 72, unknown 9.6
1851 Male, age 51, unknown 9.2
2583 Male, age 75, right hemisphere 8.8
2665 Male, age 74, both hemispheres 8.7
2590 Female, age 75, unknown 8.6
2699 Male, age 18, unknown 8.6
Superior colliculus
nTPM: 8.7
1895 Male, age 76, right hemisphere 10.7
2668 Female, age 75, unknown 10.2
1839 Male, age 51, unknown 9.9
1913 Female, age 42, unknown 8.9
2087 Female, age 72, unknown 8.7
2261 Male, age 18, unknown 8.4
2587 Male, age 74, left hemisphere 8.2
2664 Male, age 75, both hemispheres 7.8
1995 Male, age 72, unknown 7.5
1796 Male, age 53, unknown 7.1
Ventral tegmental area
nTPM: 9.1
2218 Male, age 76, both hemispheres 10.0
2410 Female, age 72, unknown 9.8
1915 Female, age 42, unknown 9.1
1942 Male, age 51, unknown 8.9
2223 Female, age 72, unknown 8.9
2021 Male, age 53, unknown 7.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 20.9
Min nTPM: 4.8
Std nTPM: 2.6
Median nTPM: 10.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 20.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 17.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 16.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 15.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 14.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 23.4
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 23.2
Sample C Male 23.4
Sample D Male 21.6
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 20.2
Min nTPM: 19.1
Sample B Female 20.2
Sample C Male 19.6
Sample D Male 19.1
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 25.2
Min nTPM: 15.4
Sample A Female 25.2
Sample B Female 20.7
Sample C Male 22.8
Sample D Male 15.4
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 24.9
Min nTPM: 17.7
Sample A Female 20.0
Sample B Female 17.7
Sample C Male 24.9
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 25.4
Min nTPM: 22.8
Sample A Male 23.2
Sample B Male 25.4
Sample C Female 24.3
Sample D Female 22.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74635797 Antisense, RP_060215_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.