MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.3 nTPM
HPA:86.3 nTPM
GTEx:12.0 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:121.3 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.1
2219 Male, age 76, both hemispheres 17.1
1833 Male, age 53, unknown 6.4
1830 Male, age 51, unknown 3.1
2411 Female, age 72, unknown 2.3
2586 Male, age 75, left hemisphere 1.5
1870 Female, age 42, unknown 0.3
2828 Female, age 72, unknown 0.2
2666 Male, age 74, left hemisphere 0.1
1827 Male, age 72, unknown 0.0
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 43.7
2047 Male, age 72, unknown 123.0
2750 Male, age 76, both hemispheres 45.7
2298 Female, age 72, unknown 43.6
1828 Male, age 53, unknown 3.3
2016 Female, age 72, unknown 2.9
Inferior colliculus
nTPM: 0.4
1890 Male, age 53, unknown 1.4
1848 Female, age 42, unknown 0.1
2849 Male, age 72, unknown 0.1
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 86.3
2220 Male, age 76, midline 86.3
Pedunculopontine tegmental nucleus
nTPM: 3.8
2334 Male, age 80, both hemispheres 10.2
2338 Male, age 61, both hemispheres 0.7
1921 Female, age 85, both hemispheres 0.4
Periaquaductal grey, anterior
nTPM: 0.3
2502 Female, age 75, unknown 0.9
1795 Male, age 51, unknown 0.1
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 5.7
2850 Male, age 76, both hemispheres 11.4
1840 Male, age 53, unknown 6.6
2464 Female, age 72, unknown 5.0
1831 Male, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 0.4
2140 Male, age 76, both hemispheres 0.9
2272 Male, age 74, both hemispheres 0.3
2053 Male, age 18, unknown 0.0
Pretectal area
nTPM: 0.4
2825 Male, age 18, unknown 1.6
2224 Female, age 72, unknown 1.0
2667 Female, age 75, unknown 0.8
1944 Female, age 72, unknown 0.7
1815 Male, age 53, unknown 0.4
2273 Male, age 74, both hemispheres 0.3
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
2007 Male, age 72, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 0.3
2584 Male, age 75, left hemisphere 1.2
2725 Female, age 75, unknown 1.0
1904 Male, age 53, unknown 0.5
2227 Male, age 72, unknown 0.3
1821 Female, age 72, unknown 0.2
2588 Male, age 74, left hemisphere 0.2
2769 Male, age 72, unknown 0.1
1865 Male, age 51, unknown 0.0
1954 Female, age 42, unknown 0.0
2503 Female, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 29.3
2241 Male, age 72, unknown 72.7
1916 Female, age 42, unknown 63.8
2699 Male, age 18, unknown 49.4
1851 Male, age 51, unknown 39.4
2409 Female, age 72, unknown 25.3
1941 Male, age 53, unknown 24.7
2665 Male, age 74, both hemispheres 8.2
1889 Female, age 72, unknown 5.8
2590 Female, age 75, unknown 2.0
2583 Male, age 75, right hemisphere 1.3
Superior colliculus
nTPM: 0.2
2668 Female, age 75, unknown 0.9
1796 Male, age 53, unknown 0.5
2087 Female, age 72, unknown 0.4
2587 Male, age 74, left hemisphere 0.1
2664 Male, age 75, both hemispheres 0.1
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
Ventral tegmental area
nTPM: 26.3
1915 Female, age 42, unknown 42.2
2218 Male, age 76, both hemispheres 31.6
2223 Female, age 72, unknown 30.9
2410 Female, age 72, unknown 26.0
1942 Male, age 51, unknown 23.0
2021 Male, age 53, unknown 4.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 120.0
Min nTPM: 0.0
Std nTPM: 20.4
Median nTPM: 2.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 120.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 85.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 65.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 58.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 57.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 52.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 52.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 52.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.5
Pig sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 20.4
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 20.4
Sample C Male 3.5
Sample D Male 2.9
Periaqueductal gray
nTPM: 34.0
Samples: 3

Max nTPM: 89.0
Min nTPM: 4.5
Sample B Female 4.5
Sample C Male 89.0
Sample D Male 8.4
Substantia nigra
nTPM: 74.5
Samples: 4

Max nTPM: 140.8
Min nTPM: 4.2
Sample A Female 119.9
Sample B Female 33.0
Sample C Male 140.8
Sample D Male 4.2
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 29.3
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 29.3
Sample C Male 4.0
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.3
Samples: 4

Max nTPM: 127.4
Min nTPM: 117.6
Sample A Male 117.6
Sample B Male 127.4
Sample C Female 118.1
Sample D Female 122.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
80525305 Antisense, RP_071018_03_D05, Mouse strain C57BL/6J (56 days, male) 2.3
335 Antisense, RP_Baylor_102723, Mouse strain C57BL/6J (56 days, male) 2.2
79556614 Antisense, RP_071018_03_D05, Mouse strain C57BL/6J (56 days, male) 1.9
334 Antisense, RP_Baylor_102723, Mouse strain C57BL/6J (56 days, male) 1.4
336 Sense, RPS_Baylor_36975, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.