MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:104.8 nTPM
HPA:104.8 nTPM
GTEx:53.7 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:6.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.0
2828 Female, age 72, unknown 94.2
2586 Male, age 75, left hemisphere 85.5
1870 Female, age 42, unknown 82.0
1827 Male, age 72, unknown 76.3
1833 Male, age 53, unknown 74.3
1830 Male, age 51, unknown 73.6
2666 Male, age 74, left hemisphere 69.6
2411 Female, age 72, unknown 66.6
2219 Male, age 76, both hemispheres 66.0
2019 Male, age 18, unknown 62.1
Dorsal raphe nucleus
nTPM: 78.0
2016 Female, age 72, unknown 91.0
1828 Male, age 53, unknown 79.0
2298 Female, age 72, unknown 77.3
2047 Male, age 72, unknown 71.6
2750 Male, age 76, both hemispheres 71.3
Inferior colliculus
nTPM: 72.9
2849 Male, age 72, unknown 82.5
1848 Female, age 42, unknown 75.1
1890 Male, age 53, unknown 67.4
2097 Female, age 72, unknown 66.5
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Pedunculopontine tegmental nucleus
nTPM: 66.9
2338 Male, age 61, both hemispheres 67.1
1921 Female, age 85, both hemispheres 66.9
2334 Male, age 80, both hemispheres 66.7
Periaquaductal grey, anterior
nTPM: 91.9
1795 Male, age 51, unknown 102.0
2502 Female, age 75, unknown 89.0
1947 Male, age 18, unknown 84.6
Periaquaductal grey, dorsal
nTPM: 95.1
2850 Male, age 76, both hemispheres 114.2
1831 Male, age 72, unknown 94.5
1840 Male, age 53, unknown 93.5
2464 Female, age 72, unknown 78.2
Periaquaductal grey, lateral
nTPM: 104.8
2053 Male, age 18, unknown 114.3
2140 Male, age 76, both hemispheres 107.1
2272 Male, age 74, both hemispheres 93.0
Pretectal area
nTPM: 80.0
2273 Male, age 74, both hemispheres 103.6
2825 Male, age 18, unknown 95.5
2407 Male, age 75, both hemispheres 86.9
2316 Male, age 76, right hemisphere 85.2
2667 Female, age 75, unknown 83.2
2224 Female, age 72, unknown 82.6
1815 Male, age 53, unknown 75.8
1944 Female, age 72, unknown 73.2
1816 Male, age 51, unknown 65.2
1817 Female, age 42, unknown 64.3
2007 Male, age 72, unknown 63.9
Red nucleus
nTPM: 74.0
2823 Male, age 76, right hemisphere 81.6
2725 Female, age 75, unknown 80.2
2503 Female, age 72, unknown 77.9
2769 Male, age 72, unknown 77.4
2227 Male, age 72, unknown 77.0
1904 Male, age 53, unknown 74.6
1865 Male, age 51, unknown 72.8
2588 Male, age 74, left hemisphere 72.6
1821 Female, age 72, unknown 70.5
1954 Female, age 42, unknown 69.8
2584 Male, age 75, left hemisphere 67.1
2785 Male, age 18, unknown 67.0
Substantia nigra
nTPM: 73.8
2699 Male, age 18, unknown 95.2
2590 Female, age 75, unknown 82.6
1851 Male, age 51, unknown 78.8
2409 Female, age 72, unknown 75.2
1916 Female, age 42, unknown 74.8
2583 Male, age 75, right hemisphere 69.3
2665 Male, age 74, both hemispheres 68.2
1941 Male, age 53, unknown 65.1
1889 Female, age 72, unknown 64.8
2241 Male, age 72, unknown 63.5
Superior colliculus
nTPM: 84.6
1995 Male, age 72, unknown 105.2
2664 Male, age 75, both hemispheres 102.8
1913 Female, age 42, unknown 96.8
1796 Male, age 53, unknown 89.8
1839 Male, age 51, unknown 85.7
2587 Male, age 74, left hemisphere 76.2
2087 Female, age 72, unknown 75.2
1895 Male, age 76, right hemisphere 75.1
2261 Male, age 18, unknown 74.0
2668 Female, age 75, unknown 65.0
Ventral tegmental area
nTPM: 75.3
2021 Male, age 53, unknown 84.2
1915 Female, age 42, unknown 80.9
1942 Male, age 51, unknown 75.1
2410 Female, age 72, unknown 71.7
2223 Female, age 72, unknown 71.4
2218 Male, age 76, both hemispheres 68.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.7
Samples: 139

Max nTPM: 276.5
Min nTPM: 3.8
Std nTPM: 38.4
Median nTPM: 43.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 276.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 211.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 199.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 151.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 149.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 142.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 118.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 115.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 115.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 109.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 102.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.5
FF:10158-103A5 76 years, female 32.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 5.0
Sample A Female 27.8
Sample B Female 5.0
Sample C Male 7.0
Sample D Male 8.5
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 13.6
Min nTPM: 9.6
Sample B Female 9.6
Sample C Male 12.6
Sample D Male 13.6
Substantia nigra
nTPM: 16.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 10.3
Sample A Female 15.7
Sample B Female 24.0
Sample C Male 10.3
Sample D Male 14.7
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 5.7
Sample A Female 11.9
Sample B Female 6.7
Sample C Male 5.7
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.5
Sample A Male 7.8
Sample B Male 6.6
Sample C Female 5.5
Sample D Female 6.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
73514695 Antisense, RP_051121_02_H07, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.