MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:256.8 nTPM
HPA:256.8 nTPM
GTEx:302.7 nTPM
FANTOM5:483.4 Scaled Tags Per Million
Pig:223.9 nTPM
Mouse:304.9 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 256.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 247.9
2586 Male, age 75, left hemisphere 316.0
2666 Male, age 74, left hemisphere 282.7
2828 Female, age 72, unknown 258.6
1827 Male, age 72, unknown 254.8
1833 Male, age 53, unknown 243.5
1870 Female, age 42, unknown 242.7
1830 Male, age 51, unknown 231.5
2411 Female, age 72, unknown 225.0
2219 Male, age 76, both hemispheres 220.1
2019 Male, age 18, unknown 204.6
Dorsal raphe nucleus
nTPM: 229.4
1828 Male, age 53, unknown 244.3
2047 Male, age 72, unknown 244.3
2750 Male, age 76, both hemispheres 232.5
2298 Female, age 72, unknown 221.4
2016 Female, age 72, unknown 204.4
Inferior colliculus
nTPM: 223.6
2849 Male, age 72, unknown 265.2
1848 Female, age 42, unknown 232.2
1890 Male, age 53, unknown 201.6
2097 Female, age 72, unknown 195.5
Median raphe nucleus
nTPM: 256.8
2220 Male, age 76, midline 256.8
Pedunculopontine tegmental nucleus
nTPM: 233.8
2334 Male, age 80, both hemispheres 259.5
1921 Female, age 85, both hemispheres 223.7
2338 Male, age 61, both hemispheres 218.0
Periaquaductal grey, anterior
nTPM: 248.5
1947 Male, age 18, unknown 262.0
2502 Female, age 75, unknown 243.5
1795 Male, age 51, unknown 240.0
Periaquaductal grey, dorsal
nTPM: 219.6
2850 Male, age 76, both hemispheres 246.2
2464 Female, age 72, unknown 215.4
1840 Male, age 53, unknown 214.8
1831 Male, age 72, unknown 201.9
Periaquaductal grey, lateral
nTPM: 206.6
2053 Male, age 18, unknown 218.4
2140 Male, age 76, both hemispheres 210.8
2272 Male, age 74, both hemispheres 190.8
Pretectal area
nTPM: 228.1
1817 Female, age 42, unknown 255.2
2825 Male, age 18, unknown 251.5
1816 Male, age 51, unknown 248.8
2667 Female, age 75, unknown 248.4
1815 Male, age 53, unknown 238.3
2007 Male, age 72, unknown 227.3
1944 Female, age 72, unknown 226.9
2407 Male, age 75, both hemispheres 220.8
2224 Female, age 72, unknown 210.4
2316 Male, age 76, right hemisphere 200.8
2273 Male, age 74, both hemispheres 180.2
Red nucleus
nTPM: 238.8
1821 Female, age 72, unknown 271.9
2584 Male, age 75, left hemisphere 256.2
2769 Male, age 72, unknown 248.9
2227 Male, age 72, unknown 240.7
1954 Female, age 42, unknown 239.2
2823 Male, age 76, right hemisphere 237.1
1865 Male, age 51, unknown 235.8
2725 Female, age 75, unknown 235.0
2588 Male, age 74, left hemisphere 234.7
1904 Male, age 53, unknown 227.3
2503 Female, age 72, unknown 222.9
2785 Male, age 18, unknown 216.2
Substantia nigra
nTPM: 255.8
1916 Female, age 42, unknown 296.5
1941 Male, age 53, unknown 290.8
2699 Male, age 18, unknown 286.1
1851 Male, age 51, unknown 265.4
2665 Male, age 74, both hemispheres 257.8
2583 Male, age 75, right hemisphere 254.7
1889 Female, age 72, unknown 250.8
2241 Male, age 72, unknown 227.8
2590 Female, age 75, unknown 218.5
2409 Female, age 72, unknown 209.6
Superior colliculus
nTPM: 232.0
2664 Male, age 75, both hemispheres 281.9
2668 Female, age 75, unknown 252.3
1796 Male, age 53, unknown 245.0
1839 Male, age 51, unknown 238.8
1895 Male, age 76, right hemisphere 223.5
2587 Male, age 74, left hemisphere 222.9
2261 Male, age 18, unknown 220.1
2087 Female, age 72, unknown 219.8
1913 Female, age 42, unknown 215.9
1995 Male, age 72, unknown 199.9
Ventral tegmental area
nTPM: 236.2
1915 Female, age 42, unknown 258.4
2410 Female, age 72, unknown 249.1
2223 Female, age 72, unknown 246.4
2218 Male, age 76, both hemispheres 238.2
1942 Male, age 51, unknown 219.3
2021 Male, age 53, unknown 205.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 302.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 302.7
Samples: 139

Max nTPM: 600.3
Min nTPM: 155.9
Std nTPM: 67.1
Median nTPM: 294.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 600.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 478.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 441.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 439.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 437.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 432.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 427.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 425.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 424.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 412.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 410.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 483.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 483.4
FF:10158-103A5 76 years, female 483.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 223.9
Pig sample Sample description nTPM
Midbrain
nTPM: 223.9
Samples: 4

Max nTPM: 299.8
Min nTPM: 192.0
Sample A Female 299.8
Sample B Female 192.2
Sample C Male 211.7
Sample D Male 192.0
Periaqueductal gray
nTPM: 170.5
Samples: 3

Max nTPM: 180.3
Min nTPM: 163.7
Sample B Female 167.4
Sample C Male 180.3
Sample D Male 163.7
Substantia nigra
nTPM: 213.3
Samples: 4

Max nTPM: 250.0
Min nTPM: 160.2
Sample A Female 250.0
Sample B Female 160.2
Sample C Male 246.3
Sample D Male 196.8
Superior colliculi
nTPM: 215.4
Samples: 4

Max nTPM: 239.9
Min nTPM: 157.0
Sample A Female 232.3
Sample B Female 157.0
Sample C Male 239.9
Sample D Male 232.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 304.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 304.9
Samples: 4

Max nTPM: 322.2
Min nTPM: 297.3
Sample A Male 322.2
Sample B Male 297.3
Sample C Female 299.5
Sample D Female 300.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69013750 Antisense, RP_050309_02_H09, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.