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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:41.9 nTPM
HPA:41.9 nTPM
GTEx:164.4 nTPM
FANTOM5:874.8 Scaled Tags Per Million
Pig:182.7 nTPM
Mouse:525.2 nTPM
Allen mouse:21.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Amygdala
nTPM: 3.3
2517 Female, age 94, left hemisphere 16.5
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 40.7
2685 Female, age 94, left hemisphere 97.3
2243 Female, age 91, right hemisphere 78.7
2827 Female, age 67, right hemisphere 42.7
2110 Male, age 80, left hemisphere 13.7
2609 Male, age 75, right hemisphere 11.9
1955 Male, age 76, both hemispheres 0.0
Central amygdala
nTPM: 19.6
2239 Male, age 80, left hemisphere 37.0
2701 Female, age 91, right hemisphere 35.2
2826 Female, age 94, left hemisphere 25.8
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 41.9
2242 Female, age 91, right hemisphere 77.2
2535 Female, age 67, right hemisphere 73.6
2829 Male, age 80, left hemisphere 60.1
2429 Female, age 94, left hemisphere 40.3
2240 Male, age 76, both hemispheres 0.0
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 19.4
2255 Female, age 91, right hemisphere 50.3
2534 Female, age 94, left hemisphere 33.1
2256 Male, age 80, left hemisphere 32.9
1883 Male, age 76, both hemispheres 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 27.4
2486 Female, age 94, both hemispheres 52.1
1974 Female, age 91, both hemispheres 28.8
2201 Male, age 74, unknown 1.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 164.4
Samples: 152

Max nTPM: 444.4
Min nTPM: 14.7
Std nTPM: 90.8
Median nTPM: 150.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 444.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 437.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 427.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 392.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 330.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 314.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 309.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 303.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 301.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 290.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 290.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 289.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 287.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 286.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 282.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 279.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 279.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 276.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 274.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 271.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 271.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 271.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 270.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 270.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 268.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 265.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 261.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 256.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 255.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 254.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 243.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 241.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 240.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 240.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 236.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 236.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 235.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 227.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 223.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 222.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 222.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 222.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 222.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 219.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 218.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 217.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 216.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 215.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 215.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 215.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 210.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 209.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 207.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 202.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 200.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 199.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 192.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 185.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 180.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 179.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 175.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 175.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 175.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 172.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 171.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 170.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 170.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 169.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 169.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 168.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 167.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 163.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 160.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 154.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 151.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 150.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 146.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 146.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 145.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 143.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 143.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 142.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 139.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 138.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 131.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 127.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 127.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 127.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 124.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 124.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 124.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 122.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 122.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 120.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 117.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 116.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 112.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 111.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 110.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 107.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 106.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 104.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 103.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 102.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 101.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 99.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 94.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 87.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 86.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 84.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 79.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 78.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 76.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 75.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 75.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 74.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 73.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 72.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 66.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 65.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 64.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 63.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 62.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 61.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 61.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 60.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 55.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 54.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 48.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 41.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 40.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 39.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 38.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 36.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 32.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 31.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 25.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 14.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 874.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 874.8
FF:10151-102I7 76 years, female 874.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 182.7
Pig sample Sample description nTPM
Amygdala
nTPM: 182.7
Samples: 4

Max nTPM: 241.7
Min nTPM: 128.3
Sample A Female 241.7
Sample B Female 128.3
Sample C Male 186.5
Sample D Male 174.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 525.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 525.2
Samples: 4

Max nTPM: 595.7
Min nTPM: 456.8
Sample A Male 456.8
Sample B Male 534.7
Sample C Female 595.7
Sample D Female 513.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.0
68193007 Antisense, RP_040922_01_D12, Mouse strain C57BL/6J (56 days, male) 29.9
72109445 Antisense, RP_050712_04_G07, Mouse strain C57BL/6J (56 days, male) 17.7
72182975 Antisense, RP_050719_03_A03, Mouse strain C57BL/6J (56 days, male) 15.4
70918916 Antisense, RP_050712_04_G07, Mouse strain C57BL/6J (56 days, male) 13.9

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