MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.8 nTPM
HPA:97.8 nTPM
GTEx:118.4 nTPM
FANTOM5:64.0 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:118.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.5
2586 Male, age 75, left hemisphere 96.9
1870 Female, age 42, unknown 95.3
2828 Female, age 72, unknown 95.1
1833 Male, age 53, unknown 93.4
1827 Male, age 72, unknown 92.0
1830 Male, age 51, unknown 91.5
2411 Female, age 72, unknown 91.1
2219 Male, age 76, both hemispheres 90.8
2019 Male, age 18, unknown 90.7
2666 Male, age 74, left hemisphere 87.8
Dorsal raphe nucleus
nTPM: 96.1
2016 Female, age 72, unknown 99.7
2298 Female, age 72, unknown 96.4
1828 Male, age 53, unknown 95.7
2047 Male, age 72, unknown 94.5
2750 Male, age 76, both hemispheres 94.2
Inferior colliculus
nTPM: 97.8
1848 Female, age 42, unknown 100.4
2097 Female, age 72, unknown 98.0
1890 Male, age 53, unknown 97.5
2849 Male, age 72, unknown 95.6
Median raphe nucleus
nTPM: 95.9
2220 Male, age 76, midline 95.9
Pedunculopontine tegmental nucleus
nTPM: 93.0
1921 Female, age 85, both hemispheres 97.5
2334 Male, age 80, both hemispheres 94.6
2338 Male, age 61, both hemispheres 87.0
Periaquaductal grey, anterior
nTPM: 94.4
2502 Female, age 75, unknown 96.8
1947 Male, age 18, unknown 95.5
1795 Male, age 51, unknown 90.8
Periaquaductal grey, dorsal
nTPM: 96.3
2850 Male, age 76, both hemispheres 100.1
1840 Male, age 53, unknown 99.5
2464 Female, age 72, unknown 96.1
1831 Male, age 72, unknown 89.7
Periaquaductal grey, lateral
nTPM: 94.3
2140 Male, age 76, both hemispheres 99.4
2053 Male, age 18, unknown 93.9
2272 Male, age 74, both hemispheres 89.7
Pretectal area
nTPM: 94.7
2667 Female, age 75, unknown 98.3
1817 Female, age 42, unknown 97.4
1944 Female, age 72, unknown 97.0
2224 Female, age 72, unknown 96.5
2316 Male, age 76, right hemisphere 96.0
1815 Male, age 53, unknown 93.6
1816 Male, age 51, unknown 93.5
2825 Male, age 18, unknown 93.5
2273 Male, age 74, both hemispheres 92.4
2007 Male, age 72, unknown 92.0
2407 Male, age 75, both hemispheres 91.3
Red nucleus
nTPM: 94.8
1821 Female, age 72, unknown 101.8
1954 Female, age 42, unknown 100.0
2227 Male, age 72, unknown 98.7
1904 Male, age 53, unknown 97.3
2769 Male, age 72, unknown 97.0
2503 Female, age 72, unknown 96.4
2823 Male, age 76, right hemisphere 96.4
1865 Male, age 51, unknown 95.0
2785 Male, age 18, unknown 91.2
2725 Female, age 75, unknown 89.0
2588 Male, age 74, left hemisphere 88.3
2584 Male, age 75, left hemisphere 86.7
Substantia nigra
nTPM: 97.1
2241 Male, age 72, unknown 106.9
2699 Male, age 18, unknown 104.2
1916 Female, age 42, unknown 99.6
1851 Male, age 51, unknown 99.3
1889 Female, age 72, unknown 97.9
2409 Female, age 72, unknown 94.8
2590 Female, age 75, unknown 93.1
2665 Male, age 74, both hemispheres 93.1
1941 Male, age 53, unknown 91.8
2583 Male, age 75, right hemisphere 90.5
Superior colliculus
nTPM: 93.1
2668 Female, age 75, unknown 96.7
1895 Male, age 76, right hemisphere 95.7
2087 Female, age 72, unknown 95.1
1839 Male, age 51, unknown 93.9
2664 Male, age 75, both hemispheres 92.7
2261 Male, age 18, unknown 92.3
1995 Male, age 72, unknown 92.0
1796 Male, age 53, unknown 91.7
2587 Male, age 74, left hemisphere 90.8
1913 Female, age 42, unknown 90.5
Ventral tegmental area
nTPM: 93.2
1942 Male, age 51, unknown 94.9
1915 Female, age 42, unknown 94.2
2218 Male, age 76, both hemispheres 94.0
2021 Male, age 53, unknown 93.7
2410 Female, age 72, unknown 91.9
2223 Female, age 72, unknown 90.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.4
Samples: 139

Max nTPM: 494.2
Min nTPM: 23.6
Std nTPM: 74.2
Median nTPM: 102.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 494.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 434.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 398.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 332.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 283.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 266.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 261.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 248.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 239.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 233.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 228.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.0
FF:10158-103A5 76 years, female 64.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.1
Sample A Female 14.3
Sample B Female 12.0
Sample C Male 10.1
Sample D Male 10.2
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 10.1
Min nTPM: 9.4
Sample B Female 10.1
Sample C Male 9.4
Sample D Male 10.0
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.9
Sample A Female 11.8
Sample B Female 8.9
Sample C Male 10.0
Sample D Male 10.6
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.2
Sample A Female 11.8
Sample B Female 9.2
Sample C Male 11.3
Sample D Male 11.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 118.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.8
Samples: 4

Max nTPM: 125.9
Min nTPM: 113.8
Sample A Male 125.9
Sample B Male 113.8
Sample C Female 116.6
Sample D Female 118.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
76003665 Antisense, RP_060608_03_A06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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