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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:13.6 nTPM
GTEx:9.4 nTPM
FANTOM5:5.2 Scaled Tags Per Million
Pig:21.8 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 13.6
Sample id Sample description nTPM
Putamen
nTPM: 13.6
2489 Female, age 72, unknown 18.3
1829 Male, age 74, unknown 14.6
2647 Male, age 75, left hemisphere 14.4
1937 Female, age 91, right hemisphere 13.7
2482 Female, age 94, left hemisphere 11.9
2466 Female, age 79, unknown 11.4
1838 Male, age 80, right hemisphere 11.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 9.4
Samples: 205

Max nTPM: 27.5
Min nTPM: 3.2
Std nTPM: 3.6
Median nTPM: 8.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 27.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 25.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 22.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 18.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 18.1
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 18.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 17.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 17.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 17.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 16.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 16.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 15.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 15.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 15.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 14.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 14.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 14.2
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 14.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 14.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 13.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 13.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 13.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 13.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 13.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 13.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 13.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 13.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 12.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 12.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 12.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 12.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 12.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 12.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 12.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 12.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 12.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 12.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 12.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 12.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 11.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 11.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 11.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 11.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 11.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 11.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 11.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 11.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 11.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 11.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 11.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 11.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 10.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 10.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 10.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 10.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 10.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 10.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 10.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 10.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 10.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 10.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 10.5
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 10.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 10.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 10.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 10.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 10.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 10.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 9.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 9.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 9.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 9.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 9.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 9.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 9.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 9.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 9.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 9.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 9.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 9.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 9.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 9.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 9.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 9.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 9.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 9.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 9.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 9.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 9.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 9.1
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 9.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 9.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 9.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 9.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 9.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 9.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 9.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 8.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 8.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 8.8
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 8.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 8.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 8.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 8.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 8.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 8.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 8.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 8.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 8.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 8.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 8.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 8.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 8.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 8.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 8.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 8.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 8.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 8.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 8.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 8.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 8.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 8.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 8.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 8.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 8.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 8.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 8.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 8.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 8.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 8.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 8.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 7.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 7.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 7.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 7.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 7.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 7.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 7.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 7.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 7.6
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 7.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 7.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 7.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 7.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 7.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 7.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 7.3
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 7.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 7.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 7.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 7.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 7.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 7.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 7.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 7.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 7.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 7.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 7.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 7.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 7.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 6.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 6.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 6.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 6.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 6.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 6.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 6.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 6.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 6.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 6.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 6.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 6.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 6.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 6.5
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 6.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 6.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 6.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 6.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 6.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 6.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 6.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 6.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 6.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 6.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 5.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 5.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 5.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 5.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 5.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 5.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 4.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 4.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 4.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 4.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 4.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 4.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 3.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 3.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 3.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 3.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 3.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 5.2
FF:10176-103C5 60 years, female 5.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.8
Pig sample Sample description nTPM
Putamen
nTPM: 21.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 21.7
Sample C Male 32.4
Sample D Male 25.4

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