MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:109.1 nTPM
HPA:109.1 nTPM
GTEx:99.4 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:81.8 nTPM
Mouse:68.6 nTPM
Allen mouse:17.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.6
2019 Male, age 18, unknown 109.4
2586 Male, age 75, left hemisphere 108.2
2219 Male, age 76, both hemispheres 107.1
2666 Male, age 74, left hemisphere 105.1
1827 Male, age 72, unknown 98.9
2828 Female, age 72, unknown 94.8
2411 Female, age 72, unknown 81.7
1833 Male, age 53, unknown 77.2
1870 Female, age 42, unknown 77.2
1830 Male, age 51, unknown 76.2
Dorsal raphe nucleus
nTPM: 89.6
2047 Male, age 72, unknown 99.9
1828 Male, age 53, unknown 96.7
2298 Female, age 72, unknown 90.3
2750 Male, age 76, both hemispheres 88.7
2016 Female, age 72, unknown 72.5
Inferior colliculus
nTPM: 86.9
1890 Male, age 53, unknown 89.6
1848 Female, age 42, unknown 88.6
2097 Female, age 72, unknown 87.4
2849 Male, age 72, unknown 82.1
Median raphe nucleus
nTPM: 101.2
2220 Male, age 76, midline 101.2
Pedunculopontine tegmental nucleus
nTPM: 87.8
1921 Female, age 85, both hemispheres 96.0
2334 Male, age 80, both hemispheres 94.3
2338 Male, age 61, both hemispheres 73.2
Periaquaductal grey, anterior
nTPM: 99.0
1795 Male, age 51, unknown 103.5
2502 Female, age 75, unknown 99.3
1947 Male, age 18, unknown 94.3
Periaquaductal grey, dorsal
nTPM: 81.6
1831 Male, age 72, unknown 86.5
1840 Male, age 53, unknown 83.0
2850 Male, age 76, both hemispheres 79.5
2464 Female, age 72, unknown 77.4
Periaquaductal grey, lateral
nTPM: 71.2
2140 Male, age 76, both hemispheres 73.6
2053 Male, age 18, unknown 72.6
2272 Male, age 74, both hemispheres 67.5
Pretectal area
nTPM: 103.0
2007 Male, age 72, unknown 134.3
1816 Male, age 51, unknown 133.5
1817 Female, age 42, unknown 132.4
1944 Female, age 72, unknown 129.2
2667 Female, age 75, unknown 109.8
1815 Male, age 53, unknown 108.2
2407 Male, age 75, both hemispheres 83.5
2825 Male, age 18, unknown 79.0
2224 Female, age 72, unknown 78.9
2273 Male, age 74, both hemispheres 72.5
2316 Male, age 76, right hemisphere 71.7
Red nucleus
nTPM: 81.7
2785 Male, age 18, unknown 103.6
2588 Male, age 74, left hemisphere 87.5
2584 Male, age 75, left hemisphere 86.4
1821 Female, age 72, unknown 85.4
1954 Female, age 42, unknown 83.0
2725 Female, age 75, unknown 80.3
2823 Male, age 76, right hemisphere 76.9
2769 Male, age 72, unknown 76.4
2503 Female, age 72, unknown 75.5
1865 Male, age 51, unknown 75.1
1904 Male, age 53, unknown 75.0
2227 Male, age 72, unknown 74.8
Substantia nigra
nTPM: 109.1
2665 Male, age 74, both hemispheres 155.2
1916 Female, age 42, unknown 133.9
1941 Male, age 53, unknown 128.7
1889 Female, age 72, unknown 118.2
1851 Male, age 51, unknown 113.9
2241 Male, age 72, unknown 96.6
2409 Female, age 72, unknown 92.0
2699 Male, age 18, unknown 88.4
2583 Male, age 75, right hemisphere 82.6
2590 Female, age 75, unknown 81.6
Superior colliculus
nTPM: 93.6
2664 Male, age 75, both hemispheres 122.0
2087 Female, age 72, unknown 113.2
2668 Female, age 75, unknown 108.3
1796 Male, age 53, unknown 94.2
2261 Male, age 18, unknown 92.5
1895 Male, age 76, right hemisphere 90.6
1839 Male, age 51, unknown 83.9
2587 Male, age 74, left hemisphere 82.7
1913 Female, age 42, unknown 74.9
1995 Male, age 72, unknown 73.9
Ventral tegmental area
nTPM: 94.4
2218 Male, age 76, both hemispheres 110.3
2410 Female, age 72, unknown 106.0
1915 Female, age 42, unknown 105.3
1942 Male, age 51, unknown 91.5
2021 Male, age 53, unknown 79.5
2223 Female, age 72, unknown 73.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.4
Samples: 139

Max nTPM: 359.6
Min nTPM: 13.8
Std nTPM: 55.5
Median nTPM: 88.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 359.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 280.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 216.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 213.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 199.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 186.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 186.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 184.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 182.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 182.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 178.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.8
Pig sample Sample description nTPM
Midbrain
nTPM: 81.3
Samples: 4

Max nTPM: 172.8
Min nTPM: 33.2
Sample A Female 33.2
Sample B Female 52.0
Sample C Male 172.8
Sample D Male 67.3
Periaqueductal gray
nTPM: 51.1
Samples: 3

Max nTPM: 69.6
Min nTPM: 40.6
Sample B Female 43.2
Sample C Male 69.6
Sample D Male 40.6
Substantia nigra
nTPM: 73.0
Samples: 4

Max nTPM: 110.3
Min nTPM: 28.6
Sample A Female 110.3
Sample B Female 50.0
Sample C Male 102.9
Sample D Male 28.6
Superior colliculi
nTPM: 81.8
Samples: 4

Max nTPM: 135.8
Min nTPM: 44.4
Sample A Female 76.7
Sample B Female 44.4
Sample C Male 135.8
Sample D Male 70.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.6
Samples: 4

Max nTPM: 71.8
Min nTPM: 62.7
Sample A Male 69.6
Sample B Male 62.7
Sample C Female 71.8
Sample D Female 70.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.4
583550 Antisense, RP_040831_02_G08, Mouse strain C57BL/6J (56 days, male) 17.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.