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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:299.2 nTPM
HPA:299.2 nTPM
GTEx:303.1 nTPM
FANTOM5:627.8 Scaled Tags Per Million
Pig:106.5 nTPM
Mouse:111.9 nTPM
Allen mouse:8.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 299.2
Sample id Sample description nTPM
Amygdala
nTPM: 293.9
2695 Female, age 67, right hemisphere 376.3
1987 Female, age 91, left hemisphere 299.0
2514 Male, age 75, right hemisphere 288.0
2517 Female, age 94, left hemisphere 269.6
2814 Male, age 76, right hemisphere 236.6
Basal amygdala
nTPM: 290.5
2609 Male, age 75, right hemisphere 423.0
2827 Female, age 67, right hemisphere 314.0
2243 Female, age 91, right hemisphere 299.3
2685 Female, age 94, left hemisphere 266.0
1955 Male, age 76, both hemispheres 220.5
2110 Male, age 80, left hemisphere 220.1
Central amygdala
nTPM: 293.8
2515 Male, age 75, right hemisphere 368.9
2826 Female, age 94, left hemisphere 334.9
1905 Male, age 76, both hemispheres 265.4
2239 Male, age 80, left hemisphere 260.8
2701 Female, age 91, right hemisphere 239.3
Corticomedial amygdala
nTPM: 266.5
2428 Male, age 75, right hemisphere 308.7
2242 Female, age 91, right hemisphere 298.9
2535 Female, age 67, right hemisphere 296.9
2829 Male, age 80, left hemisphere 257.1
2429 Female, age 94, left hemisphere 219.7
2240 Male, age 76, both hemispheres 217.7
Lateral amygdala
nTPM: 299.2
2516 Male, age 75, right hemisphere 378.9
2830 Female, age 67, right hemisphere 366.4
2256 Male, age 80, left hemisphere 339.2
2255 Female, age 91, right hemisphere 268.0
2534 Female, age 94, left hemisphere 232.9
1883 Male, age 76, both hemispheres 209.7
Stria terminalis, bed nucleus
nTPM: 195.8
2201 Male, age 74, unknown 292.3
1974 Female, age 91, both hemispheres 165.9
2486 Female, age 94, both hemispheres 129.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 303.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 303.1
Samples: 152

Max nTPM: 634.6
Min nTPM: 25.4
Std nTPM: 98.6
Median nTPM: 296.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 634.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 613.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 560.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 525.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 483.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 476.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 463.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 458.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 453.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 451.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 445.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 442.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 438.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 437.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 416.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 416.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 414.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 413.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 411.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 408.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 407.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 398.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 397.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 395.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 394.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 392.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 392.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 391.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 391.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 389.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 388.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 382.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 379.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 377.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 375.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 373.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 368.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 367.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 365.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 365.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 365.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 361.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 357.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 356.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 355.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 350.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 349.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 348.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 348.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 348.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 347.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 347.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 346.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 331.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 330.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 329.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 329.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 329.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 324.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 323.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 322.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 321.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 321.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 320.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 320.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 319.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 319.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 309.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 307.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 306.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 304.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 303.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 303.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 298.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 297.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 297.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 296.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 296.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 295.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 294.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 291.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 289.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 288.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 288.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 285.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 285.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 284.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 282.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 282.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 281.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 279.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 274.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 274.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 273.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 271.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 265.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 265.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 265.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 257.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 255.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 254.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 252.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 252.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 250.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 247.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 242.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 242.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 241.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 240.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 238.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 236.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 234.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 233.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 233.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 231.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 230.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 229.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 228.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 227.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 224.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 221.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 216.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 216.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 214.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 213.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 213.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 213.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 212.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 209.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 207.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 205.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 203.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 201.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 194.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 183.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 182.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 180.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 173.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 173.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 167.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 162.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 162.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 160.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 157.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 141.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 138.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 132.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 124.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 108.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 95.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 25.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 627.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 627.8
FF:10151-102I7 76 years, female 627.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.5
Pig sample Sample description nTPM
Amygdala
nTPM: 106.6
Samples: 4

Max nTPM: 123.0
Min nTPM: 87.9
Sample A Female 123.0
Sample B Female 87.9
Sample C Male 106.9
Sample D Male 108.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 111.9
Samples: 4

Max nTPM: 114.6
Min nTPM: 107.7
Sample A Male 112.1
Sample B Male 114.6
Sample C Female 113.1
Sample D Female 107.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.7
69816494 Antisense, RP_050510_01_C01, Mouse strain C57BL/6J (56 days, male) 9.2
77332715 Antisense, RP_070116_02_B11, Mouse strain C57BL/6J (56 days, male) 8.1

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