MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:316.2 nTPM
HPA:316.2 nTPM
GTEx:270.7 nTPM
FANTOM5:387.2 Scaled Tags Per Million
Pig:90.5 nTPM
Mouse:69.7 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 316.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 250.0
2828 Female, age 72, unknown 371.9
2586 Male, age 75, left hemisphere 360.6
2219 Male, age 76, both hemispheres 308.8
2666 Male, age 74, left hemisphere 284.6
1827 Male, age 72, unknown 229.7
1833 Male, age 53, unknown 207.8
1870 Female, age 42, unknown 205.7
1830 Male, age 51, unknown 190.9
2019 Male, age 18, unknown 185.0
2411 Female, age 72, unknown 154.8
Dorsal raphe nucleus
nTPM: 241.7
2016 Female, age 72, unknown 313.0
1828 Male, age 53, unknown 274.4
2047 Male, age 72, unknown 239.6
2298 Female, age 72, unknown 198.9
2750 Male, age 76, both hemispheres 182.7
Inferior colliculus
nTPM: 219.0
2849 Male, age 72, unknown 272.4
1848 Female, age 42, unknown 226.8
1890 Male, age 53, unknown 214.7
2097 Female, age 72, unknown 162.2
Median raphe nucleus
nTPM: 188.7
2220 Male, age 76, midline 188.7
Pedunculopontine tegmental nucleus
nTPM: 192.3
2334 Male, age 80, both hemispheres 221.3
1921 Female, age 85, both hemispheres 199.0
2338 Male, age 61, both hemispheres 156.7
Periaquaductal grey, anterior
nTPM: 264.3
1795 Male, age 51, unknown 327.4
2502 Female, age 75, unknown 275.7
1947 Male, age 18, unknown 189.6
Periaquaductal grey, dorsal
nTPM: 299.6
2850 Male, age 76, both hemispheres 381.9
1831 Male, age 72, unknown 325.9
1840 Male, age 53, unknown 283.7
2464 Female, age 72, unknown 206.7
Periaquaductal grey, lateral
nTPM: 316.2
2053 Male, age 18, unknown 356.7
2140 Male, age 76, both hemispheres 343.2
2272 Male, age 74, both hemispheres 248.7
Pretectal area
nTPM: 270.2
2407 Male, age 75, both hemispheres 314.1
2316 Male, age 76, right hemisphere 306.1
2825 Male, age 18, unknown 291.1
2667 Female, age 75, unknown 288.1
1944 Female, age 72, unknown 274.2
1815 Male, age 53, unknown 273.1
1816 Male, age 51, unknown 262.6
2273 Male, age 74, both hemispheres 261.1
2224 Female, age 72, unknown 248.5
1817 Female, age 42, unknown 236.9
2007 Male, age 72, unknown 216.7
Red nucleus
nTPM: 232.5
2503 Female, age 72, unknown 262.6
2769 Male, age 72, unknown 261.5
2584 Male, age 75, left hemisphere 247.7
2823 Male, age 76, right hemisphere 240.6
2588 Male, age 74, left hemisphere 239.9
2227 Male, age 72, unknown 238.8
1904 Male, age 53, unknown 233.8
1865 Male, age 51, unknown 230.2
2785 Male, age 18, unknown 222.3
1954 Female, age 42, unknown 210.7
2725 Female, age 75, unknown 206.7
1821 Female, age 72, unknown 195.1
Substantia nigra
nTPM: 249.3
2699 Male, age 18, unknown 417.0
2665 Male, age 74, both hemispheres 323.0
2583 Male, age 75, right hemisphere 297.3
1916 Female, age 42, unknown 244.6
1851 Male, age 51, unknown 241.1
2590 Female, age 75, unknown 223.4
1889 Female, age 72, unknown 211.3
1941 Male, age 53, unknown 204.5
2409 Female, age 72, unknown 182.1
2241 Male, age 72, unknown 148.6
Superior colliculus
nTPM: 275.4
2664 Male, age 75, both hemispheres 398.7
1995 Male, age 72, unknown 337.1
1913 Female, age 42, unknown 296.0
2668 Female, age 75, unknown 281.8
1796 Male, age 53, unknown 276.5
2587 Male, age 74, left hemisphere 260.8
2087 Female, age 72, unknown 258.2
1839 Male, age 51, unknown 257.5
2261 Male, age 18, unknown 227.9
1895 Male, age 76, right hemisphere 159.2
Ventral tegmental area
nTPM: 243.2
2021 Male, age 53, unknown 278.5
1942 Male, age 51, unknown 256.4
1915 Female, age 42, unknown 246.7
2218 Male, age 76, both hemispheres 231.5
2223 Female, age 72, unknown 229.2
2410 Female, age 72, unknown 216.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 270.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 270.7
Samples: 139

Max nTPM: 494.1
Min nTPM: 71.0
Std nTPM: 91.9
Median nTPM: 260.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 494.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 489.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 484.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 484.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 447.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 435.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 434.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 428.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 427.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 425.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 417.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 387.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 387.2
FF:10158-103A5 76 years, female 387.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.5
Pig sample Sample description nTPM
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 90.5
Min nTPM: 81.5
Sample A Female 81.5
Sample B Female 85.6
Sample C Male 90.5
Sample D Male 84.9
Periaqueductal gray
nTPM: 87.3
Samples: 3

Max nTPM: 92.7
Min nTPM: 80.5
Sample B Female 88.7
Sample C Male 92.7
Sample D Male 80.5
Substantia nigra
nTPM: 90.5
Samples: 4

Max nTPM: 100.7
Min nTPM: 73.3
Sample A Female 88.2
Sample B Female 73.3
Sample C Male 100.7
Sample D Male 99.7
Superior colliculi
nTPM: 80.9
Samples: 4

Max nTPM: 98.5
Min nTPM: 48.8
Sample A Female 89.5
Sample B Female 48.8
Sample C Male 86.8
Sample D Male 98.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 63.9
Sample A Male 81.0
Sample B Male 64.0
Sample C Female 63.9
Sample D Female 70.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
69816494 Antisense, RP_050510_01_C01, Mouse strain C57BL/6J (56 days, male) 7.1
77332715 Antisense, RP_070116_02_B11, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.