MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:45.7 nTPM
FANTOM5:53.5 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:89.5 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
2666 Male, age 74, left hemisphere 38.8
2411 Female, age 72, unknown 36.0
2019 Male, age 18, unknown 35.8
1830 Male, age 51, unknown 34.7
1827 Male, age 72, unknown 33.8
1833 Male, age 53, unknown 33.8
2828 Female, age 72, unknown 32.9
2219 Male, age 76, both hemispheres 32.5
1870 Female, age 42, unknown 32.3
2586 Male, age 75, left hemisphere 26.8
Dorsal raphe nucleus
nTPM: 33.6
2750 Male, age 76, both hemispheres 35.4
2298 Female, age 72, unknown 35.1
2047 Male, age 72, unknown 34.5
1828 Male, age 53, unknown 31.8
2016 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 30.6
1890 Male, age 53, unknown 32.0
1848 Female, age 42, unknown 31.1
2097 Female, age 72, unknown 29.7
2849 Male, age 72, unknown 29.5
Median raphe nucleus
nTPM: 35.3
2220 Male, age 76, midline 35.3
Pedunculopontine tegmental nucleus
nTPM: 35.7
2338 Male, age 61, both hemispheres 37.3
2334 Male, age 80, both hemispheres 35.7
1921 Female, age 85, both hemispheres 34.0
Periaquaductal grey, anterior
nTPM: 31.3
1947 Male, age 18, unknown 34.1
1795 Male, age 51, unknown 31.3
2502 Female, age 75, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 31.0
1831 Male, age 72, unknown 32.9
2464 Female, age 72, unknown 32.6
2850 Male, age 76, both hemispheres 29.4
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 31.4
2272 Male, age 74, both hemispheres 32.3
2053 Male, age 18, unknown 31.2
2140 Male, age 76, both hemispheres 30.7
Pretectal area
nTPM: 32.3
2316 Male, age 76, right hemisphere 35.7
2407 Male, age 75, both hemispheres 34.3
2667 Female, age 75, unknown 34.3
1815 Male, age 53, unknown 32.5
1817 Female, age 42, unknown 32.5
1944 Female, age 72, unknown 31.9
2224 Female, age 72, unknown 31.8
2825 Male, age 18, unknown 31.1
1816 Male, age 51, unknown 31.0
2273 Male, age 74, both hemispheres 30.5
2007 Male, age 72, unknown 30.2
Red nucleus
nTPM: 34.5
2588 Male, age 74, left hemisphere 38.2
2823 Male, age 76, right hemisphere 36.3
1904 Male, age 53, unknown 35.3
2584 Male, age 75, left hemisphere 35.2
1821 Female, age 72, unknown 35.1
2725 Female, age 75, unknown 34.6
2227 Male, age 72, unknown 34.1
2785 Male, age 18, unknown 34.0
2503 Female, age 72, unknown 33.6
1865 Male, age 51, unknown 32.6
2769 Male, age 72, unknown 32.6
1954 Female, age 42, unknown 32.0
Substantia nigra
nTPM: 35.8
2241 Male, age 72, unknown 40.7
1851 Male, age 51, unknown 39.1
2409 Female, age 72, unknown 38.8
1916 Female, age 42, unknown 38.7
2590 Female, age 75, unknown 36.3
1941 Male, age 53, unknown 34.6
2665 Male, age 74, both hemispheres 34.6
2699 Male, age 18, unknown 34.3
2583 Male, age 75, right hemisphere 30.7
1889 Female, age 72, unknown 30.2
Superior colliculus
nTPM: 31.6
2587 Male, age 74, left hemisphere 34.7
2087 Female, age 72, unknown 32.2
1895 Male, age 76, right hemisphere 32.1
1913 Female, age 42, unknown 32.0
2668 Female, age 75, unknown 31.9
1839 Male, age 51, unknown 31.5
2664 Male, age 75, both hemispheres 31.4
1796 Male, age 53, unknown 30.9
1995 Male, age 72, unknown 29.7
2261 Male, age 18, unknown 29.7
Ventral tegmental area
nTPM: 34.0
2021 Male, age 53, unknown 36.7
2223 Female, age 72, unknown 34.1
1915 Female, age 42, unknown 33.5
2218 Male, age 76, both hemispheres 33.5
2410 Female, age 72, unknown 33.1
1942 Male, age 51, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.7
Samples: 139

Max nTPM: 76.9
Min nTPM: 31.5
Std nTPM: 7.2
Median nTPM: 44.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 76.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 62.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 62.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 60.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 58.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 58.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 56.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.5
FF:10158-103A5 76 years, female 53.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Midbrain
nTPM: 16.9
Samples: 4

Max nTPM: 18.0
Min nTPM: 15.5
Sample A Female 16.9
Sample B Female 17.0
Sample C Male 15.5
Sample D Male 18.0
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 15.6
Min nTPM: 14.3
Sample B Female 15.2
Sample C Male 15.6
Sample D Male 14.3
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.4
Sample A Female 15.6
Sample B Female 14.4
Sample C Male 14.6
Sample D Male 17.0
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 16.8
Min nTPM: 15.1
Sample A Female 15.7
Sample B Female 15.1
Sample C Male 16.8
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.5
Samples: 4

Max nTPM: 92.2
Min nTPM: 86.7
Sample A Male 92.2
Sample B Male 86.7
Sample C Female 89.6
Sample D Female 89.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
68342075 Antisense, RP_041207_02_G03, Mouse strain C57BL/6J (56 days, male) 6.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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