HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		92.657
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:133.1 nTPM
HPA:133.1 nTPM
GTEx:138.1 nTPM
FANTOM5:270.6 Scaled Tags Per Million
Pig:98.3 nTPM
Mouse:94.0 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007865Antibody CAB025862
Glial cells Not detectedMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA007865
Hippocampal formation mean intensity 92.657
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 58.691
Molecular layer of the dentate gyrus 56.782
Granular dentate gyrus 63.214
CA1 - oriens layer 48.996
CA1 - pyramidal layer 73.929
CA1 - radiatum layer 60.776
CA2 - oriens layer 44.991
CA2 - pyramidal layer 83.650
CA2 - radiatum layer 58.226
CA3 - oriens layer 37.755
CA3 - pyramidal layer 56.905
CA3 - radiatum layer 48.289
Stratum lucidum 47.088
Lacunosum moleculare 51.152
Subiculum 45.748

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 133.1
Sample id Sample description nTPM
Hippocampus
nTPM: 133.1
2529 Female, age 94, left hemisphere 175.0
2148 Female, age 91, left hemisphere 139.6
1911 Female, age 85, right hemisphere 130.9
2621 Female, age 67, right hemisphere 128.4
1898 Male, age 80, left hemisphere 116.3
1855 Male, age 76, left hemisphere 108.3
Dentate gyrus
nTPM: 114.8
2528 Male, age 74, both hemispheres 134.5
2530 Female, age 94, left hemisphere 131.3
2246 Female, age 85, both hemispheres 123.4
2531 Female, age 67, both hemispheres 112.9
1927 Female, age 91, both hemispheres 103.7
2010 Male, age 76, both hemispheres 83.0
Entorhinal gyrus
nTPM: 127.6
2117 Female, age 91, right hemisphere 170.4
2686 Male, age 75, right hemisphere 138.6
1938 Female, age 85, left hemisphere 119.3
2613 Female, age 94, left hemisphere 114.9
2764 Male, age 80, right hemisphere 114.9
1787 Male, age 76, left hemisphere 107.6
Hippocampus, CA1
nTPM: 117.3
2527 Male, age 74, both hemispheres 168.6
2082 Female, age 91, right hemisphere 134.7
1873 Female, age 85, both hemispheres 117.9
2749 Male, age 80, left hemisphere 89.2
2045 Male, age 76, both hemispheres 76.0
Hippocampus, CA2
nTPM: 118.7
2113 Female, age 91, right hemisphere 142.9
2437 Female, age 94, left hemisphere 127.0
1963 Male, age 80, left hemisphere 125.4
1940 Female, age 85, left hemisphere 121.3
2249 Male, age 74, both hemispheres 118.7
1892 Male, age 76, both hemispheres 76.8
Hippocampus, CA3
nTPM: 108.3
2861 Female, age 67, both hemispheres 139.8
1891 Female, age 85, both hemispheres 120.0
2436 Male, age 74, both hemispheres 114.5
2620 Female, age 94, left hemisphere 106.7
1867 Male, age 76, both hemispheres 89.5
2137 Male, age 80, left hemisphere 79.7
Parahippocampal cortex
nTPM: 114.9
2692 Male, age 74, both hemispheres 143.8
2250 Female, age 67, right hemisphere 135.8
2622 Female, age 67, right hemisphere 130.7
2245 Female, age 91, both hemispheres 119.5
1933 Female, age 85, both hemispheres 117.3
1990 Female, age 91, right hemisphere 113.2
1850 Male, age 80, both hemispheres 101.7
2018 Male, age 76, both hemispheres 98.4
2532 Female, age 72, left hemisphere 95.0
2693 Female, age 94, both hemispheres 93.8
Perirhinal gyrus
nTPM: 99.7
1847 Female, age 91, left hemisphere 122.0
1794 Male, age 80, right hemisphere 101.0
2521 Female, age 94, right hemisphere 95.8
1841 Female, age 85, right hemisphere 92.8
2848 Male, age 76, right hemisphere 86.6
Subiculum
nTPM: 128.5
2619 Male, age 74, both hemispheres 158.2
2729 Female, age 91, right hemisphere 156.0
2438 Female, age 94, left hemisphere 135.1
1977 Female, age 85, both hemispheres 114.5
1901 Male, age 80, both hemispheres 105.6
2042 Male, age 76, both hemispheres 101.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 138.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 138.1
Samples: 197

Max nTPM: 381.8
Min nTPM: 9.3
Std nTPM: 57.7
Median nTPM: 130.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 381.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 328.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 303.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 303.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 275.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 262.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 261.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 260.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 252.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 251.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 247.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 270.6
FF:10153-102I9 76 years, female 383.3
FF:10169-103B7 60 years, female 157.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 98.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 68.7
Samples: 4

Max nTPM: 79.1
Min nTPM: 61.2
Sample A Female 79.1
Sample B Female 66.1
Sample C Male 68.4
Sample D Male 61.2
Entorhinal cortex
nTPM: 71.2
Samples: 4

Max nTPM: 82.1
Min nTPM: 62.2
Sample A Female 77.3
Sample B Female 63.2
Sample C Male 82.1
Sample D Male 62.2
Subiculum
nTPM: 98.3
Samples: 4

Max nTPM: 114.4
Min nTPM: 81.0
Sample A Female 114.4
Sample B Female 102.6
Sample C Male 95.1
Sample D Male 81.0
Ventral hippocampus
nTPM: 88.5
Samples: 4

Max nTPM: 122.8
Min nTPM: 76.2
Sample A Female 77.6
Sample B Female 76.2
Sample C Male 122.8
Sample D Male 77.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 94.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 94.0
Samples: 4

Max nTPM: 103.5
Min nTPM: 87.3
Sample A Male 103.5
Sample B Male 87.3
Sample C Female 90.0
Sample D Female 95.3
Hippocampal formation
nTPM: 93.5
Samples: 4

Max nTPM: 99.7
Min nTPM: 84.3
Sample A Male 92.3
Sample B Male 97.6
Sample C Female 84.3
Sample D Female 99.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
155 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 8.6
154 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 4.7
156 Sense, RPS_Baylor_36956, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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