MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:149.6 nTPM
HPA:149.6 nTPM
GTEx:212.3 nTPM
FANTOM5:450.5 Scaled Tags Per Million
Pig:135.3 nTPM
Mouse:2.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 149.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.6
1830 Male, age 51, unknown 143.8
2411 Female, age 72, unknown 133.4
2019 Male, age 18, unknown 129.4
1870 Female, age 42, unknown 125.9
1833 Male, age 53, unknown 121.9
2828 Female, age 72, unknown 98.4
2586 Male, age 75, left hemisphere 77.0
2666 Male, age 74, left hemisphere 74.7
1827 Male, age 72, unknown 66.1
2219 Male, age 76, both hemispheres 65.6
Dorsal raphe nucleus
nTPM: 79.2
2750 Male, age 76, both hemispheres 150.1
1828 Male, age 53, unknown 79.3
2016 Female, age 72, unknown 69.4
2047 Male, age 72, unknown 54.9
2298 Female, age 72, unknown 42.3
Inferior colliculus
nTPM: 68.1
1890 Male, age 53, unknown 82.5
1848 Female, age 42, unknown 71.2
2849 Male, age 72, unknown 64.4
2097 Female, age 72, unknown 54.3
Median raphe nucleus
nTPM: 76.7
2220 Male, age 76, midline 76.7
Pedunculopontine tegmental nucleus
nTPM: 110.5
2338 Male, age 61, both hemispheres 126.9
2334 Male, age 80, both hemispheres 114.5
1921 Female, age 85, both hemispheres 89.9
Periaquaductal grey, anterior
nTPM: 47.7
1947 Male, age 18, unknown 55.9
1795 Male, age 51, unknown 45.7
2502 Female, age 75, unknown 41.6
Periaquaductal grey, dorsal
nTPM: 45.7
2464 Female, age 72, unknown 71.4
1831 Male, age 72, unknown 52.9
2850 Male, age 76, both hemispheres 29.4
1840 Male, age 53, unknown 29.0
Periaquaductal grey, lateral
nTPM: 51.7
2272 Male, age 74, both hemispheres 72.0
2053 Male, age 18, unknown 54.7
2140 Male, age 76, both hemispheres 28.5
Pretectal area
nTPM: 59.1
2407 Male, age 75, both hemispheres 86.9
2316 Male, age 76, right hemisphere 83.1
1815 Male, age 53, unknown 69.3
2007 Male, age 72, unknown 65.9
2825 Male, age 18, unknown 64.9
2273 Male, age 74, both hemispheres 62.5
1817 Female, age 42, unknown 61.1
2224 Female, age 72, unknown 45.1
2667 Female, age 75, unknown 40.3
1944 Female, age 72, unknown 39.1
1816 Male, age 51, unknown 32.4
Red nucleus
nTPM: 149.6
1821 Female, age 72, unknown 178.3
1865 Male, age 51, unknown 176.4
2769 Male, age 72, unknown 174.4
2227 Male, age 72, unknown 173.5
2823 Male, age 76, right hemisphere 172.1
1904 Male, age 53, unknown 149.3
2785 Male, age 18, unknown 147.5
2503 Female, age 72, unknown 132.9
1954 Female, age 42, unknown 127.7
2584 Male, age 75, left hemisphere 121.9
2725 Female, age 75, unknown 121.0
2588 Male, age 74, left hemisphere 120.1
Substantia nigra
nTPM: 72.6
2583 Male, age 75, right hemisphere 100.1
2590 Female, age 75, unknown 97.4
1889 Female, age 72, unknown 86.3
1851 Male, age 51, unknown 81.4
2409 Female, age 72, unknown 77.9
1941 Male, age 53, unknown 64.5
2699 Male, age 18, unknown 61.5
1916 Female, age 42, unknown 59.6
2241 Male, age 72, unknown 54.9
2665 Male, age 74, both hemispheres 41.9
Superior colliculus
nTPM: 75.9
2668 Female, age 75, unknown 102.5
1895 Male, age 76, right hemisphere 101.8
1913 Female, age 42, unknown 101.2
2587 Male, age 74, left hemisphere 89.2
1995 Male, age 72, unknown 87.1
1839 Male, age 51, unknown 82.2
1796 Male, age 53, unknown 60.4
2664 Male, age 75, both hemispheres 47.8
2087 Female, age 72, unknown 46.9
2261 Male, age 18, unknown 39.6
Ventral tegmental area
nTPM: 101.6
2223 Female, age 72, unknown 199.3
2410 Female, age 72, unknown 99.4
2021 Male, age 53, unknown 87.2
1942 Male, age 51, unknown 79.9
2218 Male, age 76, both hemispheres 79.6
1915 Female, age 42, unknown 64.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 212.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 212.3
Samples: 139

Max nTPM: 998.1
Min nTPM: 41.6
Std nTPM: 146.3
Median nTPM: 161.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 998.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 795.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 676.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 595.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 544.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 541.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 509.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 494.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 469.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 448.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 444.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 450.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 450.5
FF:10158-103A5 76 years, female 450.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 135.3
Pig sample Sample description nTPM
Midbrain
nTPM: 135.3
Samples: 4

Max nTPM: 298.1
Min nTPM: 58.5
Sample A Female 298.1
Sample B Female 124.5
Sample C Male 58.5
Sample D Male 60.1
Periaqueductal gray
nTPM: 73.7
Samples: 3

Max nTPM: 100.1
Min nTPM: 53.0
Sample B Female 100.1
Sample C Male 53.0
Sample D Male 68.1
Substantia nigra
nTPM: 110.4
Samples: 4

Max nTPM: 172.0
Min nTPM: 72.7
Sample A Female 105.9
Sample B Female 72.7
Sample C Male 90.9
Sample D Male 172.0
Superior colliculi
nTPM: 87.8
Samples: 4

Max nTPM: 107.6
Min nTPM: 50.7
Sample A Female 92.4
Sample B Female 50.7
Sample C Male 100.6
Sample D Male 107.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.8
Sample A Male 3.4
Sample B Male 3.2
Sample C Female 1.8
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71529905 Antisense, RP_050915_01_C04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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