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HAPLN2
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:141.7 nTPM
HPA:141.7 nTPM
GTEx:637.4 nTPM
FANTOM5:442.0 Scaled Tags Per Million
Pig:220.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 141.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 120.1
2816 Male, age 47, midline 149.5
1981 Female, age 72, midline 136.8
2194 Female, age 79, both hemispheres 122.3
2048 Male, age 55, midline 106.2
2565 Male, age 75, midline 85.8
Cervical spinal cord, dorsal horn
nTPM: 133.6
2296 Male, age 66, both hemispheres 286.1
2173 Female, age 72, unknown 177.2
2069 Male, age 47, both hemispheres 111.3
1877 Male, age 55, unknown 109.2
2721 Male, age 90, both hemispheres 68.1
2297 Male, age 75, both hemispheres 49.8
Cervical spinal cord, ventral horn
nTPM: 141.7
2068 Male, age 55, unknown 170.6
2098 Female, age 72, unknown 160.0
2820 Female, age 79, both hemispheres 157.6
2480 Male, age 75, both hemispheres 138.6
2809 Male, age 90, both hemispheres 120.9
2295 Male, age 66, both hemispheres 102.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 637.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 637.4
Samples: 159

Max nTPM: 2001.8
Min nTPM: 110.0
Std nTPM: 287.6
Median nTPM: 608.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2001.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1434.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1345.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1329.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1250.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1244.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1236.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1163.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1159.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1092.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1087.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1085.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1067.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1042.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1013.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1004.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 994.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 986.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 966.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 956.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 948.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 946.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 936.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 920.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 914.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 890.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 882.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 876.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 874.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 874.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 855.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 851.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 842.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 839.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 830.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 824.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 812.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 807.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 802.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 800.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 793.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 786.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 783.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 779.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 778.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 772.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 751.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 748.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 747.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 737.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 734.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 730.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 722.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 722.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 721.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 707.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 705.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 700.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 697.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 682.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 681.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 676.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 674.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 666.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 666.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 665.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 654.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 634.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 628.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 627.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 626.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 625.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 625.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 622.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 616.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 614.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 614.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 610.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 608.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 608.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 605.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 603.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 603.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 593.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 593.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 593.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 592.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 586.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 577.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 571.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 565.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 551.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 548.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 547.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 541.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 541.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 539.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 537.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 523.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 513.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 499.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 493.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 488.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 486.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 483.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 481.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 479.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 478.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 476.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 475.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 470.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 470.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 464.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 461.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 458.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 456.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 452.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 451.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 431.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 426.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 421.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 414.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 400.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 400.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 388.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 385.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 384.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 375.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 372.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 371.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 369.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 368.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 366.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 364.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 360.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 360.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 356.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 352.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 348.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 345.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 339.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 336.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 324.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 315.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 308.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 294.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 278.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 274.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 268.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 263.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 250.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 243.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 242.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 232.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 229.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 173.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 173.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 112.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 110.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 442.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 442.0
FF:10181-103D1 60 years, female 678.6
FF:10159-103A6 76 years, female 205.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 220.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 177.2
Samples: 4

Max nTPM: 197.6
Min nTPM: 143.3
Sample A Female 178.5
Sample B Female 197.6
Sample C Male 143.3
Sample D Male 189.4
Ventral spinal cord
nTPM: 220.0
Samples: 4

Max nTPM: 252.2
Min nTPM: 192.7
Sample A Female 206.5
Sample B Female 228.6
Sample C Male 192.7
Sample D Male 252.2

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