MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.6 nTPM
HPA:61.6 nTPM
GTEx:65.7 nTPM
FANTOM5:51.0 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:14.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
2219 Male, age 76, both hemispheres 64.4
1830 Male, age 51, unknown 63.3
2586 Male, age 75, left hemisphere 61.8
2411 Female, age 72, unknown 60.0
1833 Male, age 53, unknown 59.9
2666 Male, age 74, left hemisphere 58.8
2019 Male, age 18, unknown 58.7
1870 Female, age 42, unknown 58.2
1827 Male, age 72, unknown 57.0
2828 Female, age 72, unknown 56.8
Dorsal raphe nucleus
nTPM: 54.5
2750 Male, age 76, both hemispheres 57.2
1828 Male, age 53, unknown 56.9
2016 Female, age 72, unknown 54.5
2047 Male, age 72, unknown 52.9
2298 Female, age 72, unknown 50.9
Inferior colliculus
nTPM: 56.7
2849 Male, age 72, unknown 61.2
1890 Male, age 53, unknown 57.2
1848 Female, age 42, unknown 56.4
2097 Female, age 72, unknown 52.1
Median raphe nucleus
nTPM: 59.3
2220 Male, age 76, midline 59.3
Pedunculopontine tegmental nucleus
nTPM: 60.0
2338 Male, age 61, both hemispheres 63.4
2334 Male, age 80, both hemispheres 60.3
1921 Female, age 85, both hemispheres 56.4
Periaquaductal grey, anterior
nTPM: 57.3
2502 Female, age 75, unknown 57.6
1795 Male, age 51, unknown 57.5
1947 Male, age 18, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 58.1
2464 Female, age 72, unknown 59.8
2850 Male, age 76, both hemispheres 59.5
1831 Male, age 72, unknown 56.6
1840 Male, age 53, unknown 56.5
Periaquaductal grey, lateral
nTPM: 56.1
2053 Male, age 18, unknown 57.4
2140 Male, age 76, both hemispheres 56.5
2272 Male, age 74, both hemispheres 54.3
Pretectal area
nTPM: 56.7
2407 Male, age 75, both hemispheres 61.0
2667 Female, age 75, unknown 58.1
2825 Male, age 18, unknown 57.7
1815 Male, age 53, unknown 57.3
1817 Female, age 42, unknown 56.7
2007 Male, age 72, unknown 56.4
2224 Female, age 72, unknown 56.3
2316 Male, age 76, right hemisphere 55.8
1944 Female, age 72, unknown 55.4
1816 Male, age 51, unknown 54.8
2273 Male, age 74, both hemispheres 53.7
Red nucleus
nTPM: 61.6
2503 Female, age 72, unknown 64.4
2588 Male, age 74, left hemisphere 64.4
2823 Male, age 76, right hemisphere 63.8
1865 Male, age 51, unknown 63.2
1904 Male, age 53, unknown 62.2
2769 Male, age 72, unknown 62.0
2584 Male, age 75, left hemisphere 60.8
2227 Male, age 72, unknown 60.5
1821 Female, age 72, unknown 60.4
2725 Female, age 75, unknown 60.3
1954 Female, age 42, unknown 58.9
2785 Male, age 18, unknown 58.2
Substantia nigra
nTPM: 57.4
2699 Male, age 18, unknown 62.8
2583 Male, age 75, right hemisphere 59.5
2665 Male, age 74, both hemispheres 58.2
2409 Female, age 72, unknown 58.0
1889 Female, age 72, unknown 57.5
2590 Female, age 75, unknown 57.3
2241 Male, age 72, unknown 55.5
1851 Male, age 51, unknown 55.3
1941 Male, age 53, unknown 55.2
1916 Female, age 42, unknown 54.4
Superior colliculus
nTPM: 58.0
1913 Female, age 42, unknown 62.5
1995 Male, age 72, unknown 61.7
1895 Male, age 76, right hemisphere 61.1
1839 Male, age 51, unknown 60.5
2668 Female, age 75, unknown 56.5
2587 Male, age 74, left hemisphere 56.2
2087 Female, age 72, unknown 55.8
2664 Male, age 75, both hemispheres 55.8
1796 Male, age 53, unknown 55.1
2261 Male, age 18, unknown 54.8
Ventral tegmental area
nTPM: 56.5
2223 Female, age 72, unknown 59.7
2218 Male, age 76, both hemispheres 57.5
2021 Male, age 53, unknown 56.8
2410 Female, age 72, unknown 56.2
1942 Male, age 51, unknown 54.3
1915 Female, age 42, unknown 54.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.7
Samples: 139

Max nTPM: 241.7
Min nTPM: 24.3
Std nTPM: 31.9
Median nTPM: 57.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 241.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 205.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 165.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 141.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 134.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 131.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 124.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 120.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 119.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 115.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.0
FF:10158-103A5 76 years, female 51.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.1
Pig sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.9
Sample A Female 15.8
Sample B Female 12.2
Sample C Male 10.5
Sample D Male 9.9
Periaqueductal gray
nTPM: 11.8
Samples: 3

Max nTPM: 12.7
Min nTPM: 11.0
Sample B Female 11.8
Sample C Male 12.7
Sample D Male 11.0
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 11.4
Sample C Male 12.2
Sample D Male 13.6
Superior colliculi
nTPM: 11.4
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.8
Sample A Female 11.2
Sample B Female 9.8
Sample C Male 11.4
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.3
Sample A Male 14.0
Sample B Male 14.0
Sample C Female 16.1
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70474779 Antisense, RP_050623_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.