MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:99.8 nTPM
HPA:99.8 nTPM
GTEx:84.7 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:76.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.2
2586 Male, age 75, left hemisphere 108.6
1827 Male, age 72, unknown 98.6
2219 Male, age 76, both hemispheres 97.1
2828 Female, age 72, unknown 94.4
2019 Male, age 18, unknown 92.1
2666 Male, age 74, left hemisphere 89.0
2411 Female, age 72, unknown 85.3
1833 Male, age 53, unknown 83.5
1870 Female, age 42, unknown 82.9
1830 Male, age 51, unknown 81.0
Dorsal raphe nucleus
nTPM: 89.1
2298 Female, age 72, unknown 96.7
2047 Male, age 72, unknown 95.5
2750 Male, age 76, both hemispheres 87.7
1828 Male, age 53, unknown 86.7
2016 Female, age 72, unknown 78.9
Inferior colliculus
nTPM: 89.5
2097 Female, age 72, unknown 97.1
1890 Male, age 53, unknown 87.6
1848 Female, age 42, unknown 86.9
2849 Male, age 72, unknown 86.2
Median raphe nucleus
nTPM: 95.6
2220 Male, age 76, midline 95.6
Pedunculopontine tegmental nucleus
nTPM: 88.4
1921 Female, age 85, both hemispheres 96.3
2334 Male, age 80, both hemispheres 89.6
2338 Male, age 61, both hemispheres 79.5
Periaquaductal grey, anterior
nTPM: 96.1
1795 Male, age 51, unknown 101.3
1947 Male, age 18, unknown 96.4
2502 Female, age 75, unknown 90.6
Periaquaductal grey, dorsal
nTPM: 86.0
1831 Male, age 72, unknown 89.1
1840 Male, age 53, unknown 88.9
2850 Male, age 76, both hemispheres 84.1
2464 Female, age 72, unknown 82.0
Periaquaductal grey, lateral
nTPM: 83.9
2053 Male, age 18, unknown 85.6
2140 Male, age 76, both hemispheres 84.5
2272 Male, age 74, both hemispheres 81.8
Pretectal area
nTPM: 99.8
1816 Male, age 51, unknown 118.9
1944 Female, age 72, unknown 117.3
2007 Male, age 72, unknown 112.1
1817 Female, age 42, unknown 107.4
2667 Female, age 75, unknown 104.5
1815 Male, age 53, unknown 99.6
2224 Female, age 72, unknown 93.4
2407 Male, age 75, both hemispheres 89.6
2825 Male, age 18, unknown 87.3
2316 Male, age 76, right hemisphere 84.0
2273 Male, age 74, both hemispheres 83.5
Red nucleus
nTPM: 84.2
2785 Male, age 18, unknown 93.3
2584 Male, age 75, left hemisphere 91.9
2588 Male, age 74, left hemisphere 87.4
2725 Female, age 75, unknown 86.7
2503 Female, age 72, unknown 83.4
2769 Male, age 72, unknown 82.5
1904 Male, age 53, unknown 82.4
1954 Female, age 42, unknown 82.4
2823 Male, age 76, right hemisphere 81.4
1821 Female, age 72, unknown 80.6
2227 Male, age 72, unknown 80.3
1865 Male, age 51, unknown 77.5
Substantia nigra
nTPM: 95.3
1916 Female, age 42, unknown 114.3
1889 Female, age 72, unknown 105.7
1941 Male, age 53, unknown 105.2
1851 Male, age 51, unknown 100.7
2665 Male, age 74, both hemispheres 95.0
2583 Male, age 75, right hemisphere 92.9
2699 Male, age 18, unknown 86.2
2241 Male, age 72, unknown 85.0
2590 Female, age 75, unknown 84.2
2409 Female, age 72, unknown 83.4
Superior colliculus
nTPM: 93.8
2087 Female, age 72, unknown 113.0
2668 Female, age 75, unknown 101.4
1796 Male, age 53, unknown 99.0
2261 Male, age 18, unknown 98.8
2664 Male, age 75, both hemispheres 98.8
1895 Male, age 76, right hemisphere 91.2
1839 Male, age 51, unknown 85.9
1913 Female, age 42, unknown 84.1
1995 Male, age 72, unknown 84.1
2587 Male, age 74, left hemisphere 82.2
Ventral tegmental area
nTPM: 93.0
2218 Male, age 76, both hemispheres 98.3
1915 Female, age 42, unknown 97.0
2410 Female, age 72, unknown 94.8
1942 Male, age 51, unknown 93.6
2021 Male, age 53, unknown 87.5
2223 Female, age 72, unknown 86.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.7
Samples: 139

Max nTPM: 212.9
Min nTPM: 36.5
Std nTPM: 30.4
Median nTPM: 78.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 212.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 167.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 166.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 165.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 149.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 140.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 139.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 130.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 130.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 129.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 127.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.5
Pig sample Sample description nTPM
Midbrain
nTPM: 70.3
Samples: 4

Max nTPM: 98.4
Min nTPM: 45.0
Sample A Female 45.0
Sample B Female 51.6
Sample C Male 98.4
Sample D Male 86.1
Periaqueductal gray
nTPM: 51.7
Samples: 3

Max nTPM: 62.0
Min nTPM: 45.2
Sample B Female 47.8
Sample C Male 62.0
Sample D Male 45.2
Substantia nigra
nTPM: 60.9
Samples: 4

Max nTPM: 80.6
Min nTPM: 36.5
Sample A Female 80.6
Sample B Female 51.2
Sample C Male 75.3
Sample D Male 36.5
Superior colliculi
nTPM: 76.5
Samples: 4

Max nTPM: 88.5
Min nTPM: 56.3
Sample A Female 86.5
Sample B Female 56.3
Sample C Male 88.5
Sample D Male 74.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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