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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1119.5 nTPM
GTEx:1119.5 nTPM
FANTOM5:571.1 Scaled Tags Per Million
Pig:293.6 nTPM
Mouse:1228.7 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA016970
Pigment epithelial cells Not detected
Photoreceptor cells Medium
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA074677
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1119.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1119.5
Samples: 105

Max nTPM: 2138.9
Min nTPM: 453.1
Std nTPM: 327.3
Median nTPM:
316_1 62 years, male 2138.9
217_1 76 years, male 1990.9
480_1 63 years, male 1763.9
375_1 74 years, female 1738.4
405_1 91 years, male 1722.5
466_1 57 years, female 1648.5
43_1 64 years, female 1610.3
229_1 69 years, female 1582.2
352_1 62 years, male 1558.0
386_1 76 years, male 1533.8
526_1 61 years, male 1524.2
286_1 68 years, female 1510.4
499_1 55 years, female 1486.8
142_1 61 years, female 1469.3
319_1 81 years, male 1467.2
447_1 81 years, male 1460.6
415_1 77 years, female 1458.9
318_1 68 years, male 1443.5
35_1 74 years, female 1425.7
324_1 76 years, male 1412.5
396_1 62 years, male 1405.5
6_1 73 years, female 1405.2
322_1 76 years, male 1390.0
237_1 82 years, male 1377.2
518_1 75 years, female 1366.7
355_1 70 years, female 1364.2
246_1 77 years, male 1346.8
404_1 82 years, female 1342.9
218_1 71 years, female 1334.1
389_1 86 years, female 1327.5
376_1 75 years, female 1313.3
320_1 89 years, female 1309.0
81_1 67 years, male 1303.1
172_1 72 years, female 1295.2
348_1 84 years, male 1282.3
265_1 87 years, male 1263.5
153_1 70 years, female 1253.0
468_1 89 years, male 1234.8
425_1 59 years, female 1232.8
149_1 88 years, male 1230.8
379_1 60 years, male 1225.2
354_1 81 years, female 1222.6
347_1 72 years, male 1222.3
32_1 67 years, male 1221.1
291_1 76 years, male 1190.5
266_1 85 years, male 1174.5
126_1 63 years, male 1163.3
377_1 82 years, female 1144.2
251_1 78 years, male 1140.2
292_1 71 years, male 1131.4
406_1 79 years, male 1105.3
243_1 75 years, male 1102.6
321_1 62 years, female 1097.6
490_1 67 years, female 1091.1
503_1 68 years, male 1077.8
394_1 75 years, female 1074.6
9_1 66 years, female 1060.9
350_1 84 years, female 1059.5
384_1 83 years, male 1031.8
145_1 84 years, male 1031.4
335_1 73 years, female 1022.5
353_1 82 years, female 1008.3
163_1 78 years, male 1005.8
517_1 88 years, male 1003.0
162_1 79 years, female 996.2
139_1 64 years, female 995.9
413_1 59 years, female 963.2
18_1 88 years, male 957.6
177_1 74 years, male 953.6
356_1 87 years, female 940.6
115_1 83 years, male 939.5
288_1 66 years, female 929.1
307_1 66 years, female 927.8
117_1 61 years, male 903.8
414_1 84 years, female 890.0
313_1 79 years, female 889.9
17_1 71 years, male 883.2
495_1 57 years, female 871.0
349_1 83 years, male 864.6
311_1 78 years, male 848.1
4_1 88 years, female 846.4
254_1 77 years, female 838.1
173_1 67 years, male 815.2
264_1 73 years, female 797.5
315_1 62 years, female 796.3
506_1 65 years, male 790.2
120_1 70 years, female 787.5
2_1 77 years, female 780.5
314_1 67 years, male 770.4
295_1 61 years, female 766.6
189_1 76 years, male 753.9
109_1 81 years, female 744.2
501_1 88 years, male 726.2
42_1 85 years, male 720.4
317_1 60 years, male 717.4
308_1 70 years, female 713.4
119_1 70 years, female 692.4
491_1 89 years, female 677.4
293_1 68 years, female 664.5
99_1 64 years, male 663.5
137_1 83 years, male 655.1
89_1 63 years, male 649.9
351_1 91 years, male 557.4
41_1 94 years, female 487.0
452_1 88 years, female 453.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 571.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 571.1
FF:10030-101E3 24-65 years, mixed 571.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 293.6
Pig sample Sample description nTPM
Retina
nTPM: 293.6
Samples: 4

Max nTPM: 328.3
Min nTPM: 270.2
Sample A Female 305.0
Sample B Female 270.9
Sample C Male 328.3
Sample D Male 270.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1228.7
Mouse sample Sample description nTPM
Retina
nTPM: 1228.7
Samples: 4

Max nTPM: 1338.1
Min nTPM: 1139.9
Sample A Male 1245.7
Sample B Male 1191.1
Sample C Female 1139.9
Sample D Female 1338.1

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by the Knut & Alice Wallenberg Foundation.