MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:112.8 nTPM
HPA:112.8 nTPM
GTEx:210.1 nTPM
FANTOM5:203.4 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:25.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.5
2586 Male, age 75, left hemisphere 167.3
2019 Male, age 18, unknown 83.7
2828 Female, age 72, unknown 81.7
2666 Male, age 74, left hemisphere 73.3
1833 Male, age 53, unknown 63.8
1870 Female, age 42, unknown 63.1
1827 Male, age 72, unknown 62.4
1830 Male, age 51, unknown 61.0
2411 Female, age 72, unknown 56.3
2219 Male, age 76, both hemispheres 52.8
Dorsal raphe nucleus
nTPM: 87.0
2047 Male, age 72, unknown 138.4
1828 Male, age 53, unknown 99.8
2016 Female, age 72, unknown 70.2
2750 Male, age 76, both hemispheres 67.2
2298 Female, age 72, unknown 59.3
Inferior colliculus
nTPM: 112.8
2097 Female, age 72, unknown 150.2
1890 Male, age 53, unknown 140.7
2849 Male, age 72, unknown 83.5
1848 Female, age 42, unknown 76.8
Median raphe nucleus
nTPM: 88.7
2220 Male, age 76, midline 88.7
Pedunculopontine tegmental nucleus
nTPM: 94.3
2338 Male, age 61, both hemispheres 149.8
2334 Male, age 80, both hemispheres 81.3
1921 Female, age 85, both hemispheres 51.8
Periaquaductal grey, anterior
nTPM: 68.7
2502 Female, age 75, unknown 79.4
1795 Male, age 51, unknown 69.1
1947 Male, age 18, unknown 57.5
Periaquaductal grey, dorsal
nTPM: 69.8
2850 Male, age 76, both hemispheres 94.7
2464 Female, age 72, unknown 69.1
1840 Male, age 53, unknown 60.8
1831 Male, age 72, unknown 54.6
Periaquaductal grey, lateral
nTPM: 67.0
2140 Male, age 76, both hemispheres 77.5
2053 Male, age 18, unknown 71.7
2272 Male, age 74, both hemispheres 51.9
Pretectal area
nTPM: 57.7
1817 Female, age 42, unknown 82.0
2667 Female, age 75, unknown 66.3
2825 Male, age 18, unknown 58.8
1944 Female, age 72, unknown 58.3
2407 Male, age 75, both hemispheres 58.3
2007 Male, age 72, unknown 56.6
1816 Male, age 51, unknown 54.4
2316 Male, age 76, right hemisphere 52.8
2224 Female, age 72, unknown 52.0
1815 Male, age 53, unknown 47.9
2273 Male, age 74, both hemispheres 46.9
Red nucleus
nTPM: 88.1
2725 Female, age 75, unknown 127.6
2823 Male, age 76, right hemisphere 98.6
1821 Female, age 72, unknown 96.1
2769 Male, age 72, unknown 95.8
2584 Male, age 75, left hemisphere 95.7
2227 Male, age 72, unknown 91.7
2785 Male, age 18, unknown 81.7
1954 Female, age 42, unknown 81.4
2503 Female, age 72, unknown 78.7
1865 Male, age 51, unknown 76.3
2588 Male, age 74, left hemisphere 68.1
1904 Male, age 53, unknown 65.4
Substantia nigra
nTPM: 77.4
1941 Male, age 53, unknown 105.9
2409 Female, age 72, unknown 105.5
1851 Male, age 51, unknown 97.4
1916 Female, age 42, unknown 83.8
1889 Female, age 72, unknown 73.3
2699 Male, age 18, unknown 70.5
2241 Male, age 72, unknown 68.3
2583 Male, age 75, right hemisphere 62.7
2590 Female, age 75, unknown 57.0
2665 Male, age 74, both hemispheres 50.0
Superior colliculus
nTPM: 56.1
1913 Female, age 42, unknown 63.4
1839 Male, age 51, unknown 62.7
1796 Male, age 53, unknown 59.9
1895 Male, age 76, right hemisphere 58.6
2087 Female, age 72, unknown 57.5
1995 Male, age 72, unknown 57.3
2664 Male, age 75, both hemispheres 54.6
2261 Male, age 18, unknown 52.8
2587 Male, age 74, left hemisphere 50.6
2668 Female, age 75, unknown 43.9
Ventral tegmental area
nTPM: 77.6
1915 Female, age 42, unknown 123.8
2223 Female, age 72, unknown 74.9
2218 Male, age 76, both hemispheres 68.4
2410 Female, age 72, unknown 66.9
2021 Male, age 53, unknown 66.5
1942 Male, age 51, unknown 65.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 210.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 210.1
Samples: 139

Max nTPM: 3474.6
Min nTPM: 9.1
Std nTPM: 454.4
Median nTPM: 86.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3474.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2721.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2120.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1769.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1308.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1161.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 821.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 750.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 665.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 548.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 515.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 203.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 203.4
FF:10158-103A5 76 years, female 203.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.5
Sample C Male 0.2
Sample D Male 0.3
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.1
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.2
Substantia nigra
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.5
Sample D Male 0.7
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Female 0.5
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 27.4
Min nTPM: 24.2
Sample A Male 25.5
Sample B Male 27.4
Sample C Female 24.2
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68443232 Antisense, RP_050111_01_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.