MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:42.6 nTPM
FANTOM5:173.8 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:33.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.9
1870 Female, age 42, unknown 42.3
2019 Male, age 18, unknown 39.8
2411 Female, age 72, unknown 39.6
1830 Male, age 51, unknown 38.4
1833 Male, age 53, unknown 38.3
1827 Male, age 72, unknown 36.1
2828 Female, age 72, unknown 35.4
2666 Male, age 74, left hemisphere 33.7
2586 Male, age 75, left hemisphere 33.3
2219 Male, age 76, both hemispheres 32.5
Dorsal raphe nucleus
nTPM: 37.9
2016 Female, age 72, unknown 39.5
2750 Male, age 76, both hemispheres 39.0
2298 Female, age 72, unknown 38.7
1828 Male, age 53, unknown 37.3
2047 Male, age 72, unknown 35.3
Inferior colliculus
nTPM: 37.9
2097 Female, age 72, unknown 41.7
1890 Male, age 53, unknown 37.7
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 34.8
Median raphe nucleus
nTPM: 36.6
2220 Male, age 76, midline 36.6
Pedunculopontine tegmental nucleus
nTPM: 36.6
2334 Male, age 80, both hemispheres 37.3
1921 Female, age 85, both hemispheres 36.5
2338 Male, age 61, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 36.4
2502 Female, age 75, unknown 38.2
1947 Male, age 18, unknown 37.7
1795 Male, age 51, unknown 33.3
Periaquaductal grey, dorsal
nTPM: 37.4
2850 Male, age 76, both hemispheres 39.3
2464 Female, age 72, unknown 38.7
1840 Male, age 53, unknown 36.4
1831 Male, age 72, unknown 35.3
Periaquaductal grey, lateral
nTPM: 35.9
2140 Male, age 76, both hemispheres 38.1
2272 Male, age 74, both hemispheres 35.0
2053 Male, age 18, unknown 34.6
Pretectal area
nTPM: 36.4
2273 Male, age 74, both hemispheres 39.8
1815 Male, age 53, unknown 37.7
2224 Female, age 72, unknown 36.7
2667 Female, age 75, unknown 36.6
2007 Male, age 72, unknown 36.5
2825 Male, age 18, unknown 36.5
1817 Female, age 42, unknown 36.4
2316 Male, age 76, right hemisphere 36.4
1944 Female, age 72, unknown 35.8
1816 Male, age 51, unknown 35.1
2407 Male, age 75, both hemispheres 33.2
Red nucleus
nTPM: 40.5
1821 Female, age 72, unknown 47.6
1954 Female, age 42, unknown 44.9
1904 Male, age 53, unknown 43.9
1865 Male, age 51, unknown 42.8
2503 Female, age 72, unknown 41.8
2227 Male, age 72, unknown 41.7
2769 Male, age 72, unknown 41.5
2823 Male, age 76, right hemisphere 40.4
2785 Male, age 18, unknown 39.3
2725 Female, age 75, unknown 36.5
2588 Male, age 74, left hemisphere 33.8
2584 Male, age 75, left hemisphere 32.0
Substantia nigra
nTPM: 37.1
2241 Male, age 72, unknown 40.0
2409 Female, age 72, unknown 38.8
1851 Male, age 51, unknown 38.5
1889 Female, age 72, unknown 38.1
2590 Female, age 75, unknown 37.8
2699 Male, age 18, unknown 36.9
1916 Female, age 42, unknown 36.3
2583 Male, age 75, right hemisphere 35.9
1941 Male, age 53, unknown 35.6
2665 Male, age 74, both hemispheres 32.7
Superior colliculus
nTPM: 36.8
1913 Female, age 42, unknown 40.0
1995 Male, age 72, unknown 39.6
2587 Male, age 74, left hemisphere 38.3
1839 Male, age 51, unknown 37.4
1895 Male, age 76, right hemisphere 36.9
2668 Female, age 75, unknown 36.9
1796 Male, age 53, unknown 35.4
2087 Female, age 72, unknown 35.3
2261 Male, age 18, unknown 34.4
2664 Male, age 75, both hemispheres 33.4
Ventral tegmental area
nTPM: 36.6
1915 Female, age 42, unknown 38.4
2223 Female, age 72, unknown 38.2
2410 Female, age 72, unknown 37.6
1942 Male, age 51, unknown 35.3
2218 Male, age 76, both hemispheres 35.3
2021 Male, age 53, unknown 35.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 139

Max nTPM: 79.7
Min nTPM: 25.3
Std nTPM: 9.8
Median nTPM: 40.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 67.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 67.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 65.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 65.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 65.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 64.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 60.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 59.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.8
FF:10158-103A5 76 years, female 173.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 45.5
Min nTPM: 22.8
Sample A Female 45.5
Sample B Female 32.4
Sample C Male 22.8
Sample D Male 23.8
Periaqueductal gray
nTPM: 27.8
Samples: 3

Max nTPM: 31.1
Min nTPM: 26.1
Sample B Female 31.1
Sample C Male 26.1
Sample D Male 26.1
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 36.6
Min nTPM: 30.0
Sample A Female 30.7
Sample B Female 31.6
Sample C Male 30.0
Sample D Male 36.6
Superior colliculi
nTPM: 27.9
Samples: 4

Max nTPM: 29.5
Min nTPM: 26.2
Sample A Female 29.5
Sample B Female 27.7
Sample C Male 26.2
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 35.3
Min nTPM: 33.2
Sample A Male 33.3
Sample B Male 35.3
Sample C Female 33.2
Sample D Female 33.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68193030 Antisense, RP_040825_01_G03, Mouse strain C57BL/6J (56 days, male) 0.7
70919376 Antisense, RP_050713_01_B12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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