BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:36.6 nTPM
FANTOM5:190.3 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:30.2 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039053Antibody HPA039054
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.0
2288 Male, age 75, left hemisphere 39.5
2846 Female, age 79, unknown 38.2
2290 Female, age 72, unknown 37.9
1854 Male, age 80, left hemisphere 37.6
2481 Female, age 94, left hemisphere 37.1
1857 Female, age 85, left hemisphere 37.0
2289 Male, age 61, right hemisphere 35.6
1781 Male, age 74, unknown 33.5
Claustrum
nTPM: 34.1
2392 Female, age 94, both hemispheres 36.8
1956 Male, age 74, unknown 36.5
2491 Male, age 75, both hemispheres 35.8
2292 Female, age 85, both hemispheres 35.0
2198 Male, age 80, both hemispheres 34.2
2196 Female, age 79, unknown 33.3
2568 Male, age 61, both hemispheres 33.3
2284 Female, age 91, both hemispheres 32.1
2645 Female, age 72, unknown 29.7
Globus pallidus, externus
nTPM: 40.4
2772 Female, age 79, unknown 43.9
1996 Male, age 80, right hemisphere 43.7
2395 Male, age 75, both hemispheres 41.6
2567 Female, age 72, unknown 36.3
2646 Male, age 61, right hemisphere 36.3
Globus pallidus, internus
nTPM: 42.8
2287 Male, age 75, right hemisphere 47.6
2111 Female, age 85, right hemisphere 45.7
2778 Female, age 91, both hemispheres 44.5
1818 Male, age 74, unknown 43.5
2037 Male, age 80, right hemisphere 41.0
2483 Female, age 94, right hemisphere 40.1
2566 Female, age 72, unknown 36.8
Nucleus accumbens
nTPM: 37.2
2286 Male, age 75, left hemisphere 42.2
2391 Female, age 94, left hemisphere 39.6
2824 Male, age 61, right hemisphere 37.5
2698 Female, age 72, unknown 36.8
1806 Female, age 85, left hemisphere 36.5
2732 Male, age 80, right hemisphere 35.8
1856 Female, age 91, right hemisphere 35.0
1783 Male, age 74, unknown 34.2
Nucleus basalis of Meynert
nTPM: 36.3
2393 Male, age 80, right hemisphere 38.5
2821 Male, age 75, both hemispheres 37.2
2569 Male, age 61, both hemispheres 35.0
2484 Female, age 94, left hemisphere 34.3
Nucleus of the diagonal band
nTPM: 32.7
1812 Female, age 91, both hemispheres 35.7
2775 Male, age 80, right hemisphere 33.2
1979 Male, age 74, unknown 32.5
2029 Male, age 61, right hemisphere 31.9
2195 Female, age 85, both hemispheres 30.3
Olfactory tubercle
nTPM: 33.2
2856 Male, age 75, right hemisphere 34.6
1846 Male, age 80, right hemisphere 33.8
2487 Female, age 94, left hemisphere 33.2
1998 Female, age 91, both hemispheres 31.1
Putamen
nTPM: 36.7
1829 Male, age 74, unknown 38.7
1937 Female, age 91, right hemisphere 38.2
1838 Male, age 80, right hemisphere 37.3
2482 Female, age 94, left hemisphere 36.8
2466 Female, age 79, unknown 36.7
2647 Male, age 75, left hemisphere 35.9
2489 Female, age 72, unknown 33.1
Septal nuclei
nTPM: 32.5
2199 Male, age 80, right hemisphere 35.4
2394 Male, age 61, left hemisphere 34.3
2629 Female, age 94, right hemisphere 34.1
2009 Female, age 91, both hemispheres 32.9
2031 Female, age 72, unknown 31.7
2059 Female, age 85, both hemispheres 29.9
1960 Male, age 74, unknown 29.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.6
Samples: 246

Max nTPM: 66.1
Min nTPM: 17.7
Std nTPM: 7.4
Median nTPM: 36.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 66.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 65.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 63.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 59.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 58.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 56.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 53.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 53.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 51.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 50.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.9
Samples: 246

Max nTPM: 59.7
Min nTPM: 14.0
Std nTPM: 7.3
Median nTPM: 31.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 59.7
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 55.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 55.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 52.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 51.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 51.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 50.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 50.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 49.9
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 49.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 47.7
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Brain - Putamen (basal ganglia)
Average nTPM: 35.6
Samples: 205

Max nTPM: 60.0
Min nTPM: 21.5
Std nTPM: 7.2
Median nTPM: 35.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 60.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 59.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 55.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 55.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 53.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 53.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 53.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 51.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 50.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 49.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 49.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 190.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 126.0
FF:10164-103B2 76 years, female 126.0
Globus pallidus
Scaled Tags Per Million: 190.3
FF:10175-103C4 60 years, female 218.6
FF:10161-103A8 76 years, female 162.0
Nucleus accumbens
Scaled Tags Per Million: 90.8
FF:10037-101F1 23-56 years, mixed 90.8
Putamen
Scaled Tags Per Million: 111.1
FF:10176-103C5 60 years, female 111.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.0
Pig sample Sample description nTPM
Caudate
nTPM: 13.9
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.9
Sample A Female 13.4
Sample B Female 13.6
Sample C Male 15.7
Sample D Male 12.9
Putamen
nTPM: 22.0
Samples: 4

Max nTPM: 29.8
Min nTPM: 15.3
Sample A Female 29.8
Sample B Female 15.3
Sample C Male 21.7
Sample D Male 21.1
Septum
nTPM: 20.3
Samples: 4

Max nTPM: 24.8
Min nTPM: 16.6
Sample A Female 19.3
Sample B Female 16.6
Sample C Male 24.8
Sample D Male 20.6
Ventral pallidum
nTPM: 21.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 20.4
Sample C Male 27.7
Sample D Male 23.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.5
Samples: 4

Max nTPM: 30.6
Min nTPM: 25.0
Sample A Male 30.6
Sample B Male 28.6
Sample C Female 25.9
Sample D Female 25.0
Septum
nTPM: 30.2
Samples: 4

Max nTPM: 34.2
Min nTPM: 25.8
Sample A Male 25.8
Sample B Male 30.3
Sample C Female 30.4
Sample D Female 34.2
Ventral forebrain
nTPM: 21.2
Samples: 4

Max nTPM: 22.6
Min nTPM: 20.6
Sample A Male 20.6
Sample B Male 22.6
Sample C Female 20.9
Sample D Female 20.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68193030 Antisense, RP_040825_01_G03, Mouse strain C57BL/6J (56 days, male) 1.0
70919376 Antisense, RP_050713_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.6
68193030 Antisense, RP_040825_01_G03, Mouse strain C57BL/6J (56 days, male) 1.2
70919376 Antisense, RP_050713_01_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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