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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:2141.5 nTPM
HPA:2141.5 nTPM
FANTOM5:918.8 Scaled Tags Per Million
Pig:955.0 nTPM
Allen mouse:12.4 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 2141.5
Sample id Sample description nTPM
Area postrema
nTPM: 2051.1
2306 Male, age 80, both hemispheres 2153.3
2799 Male, age 61, both hemispheres 2031.6
2054 Male, age 76, both hemispheres 1968.4
Cuneate nuclei
nTPM: 1990.3
2381 Male, age 80, both hemispheres 2053.6
2376 Male, age 61, both hemispheres 2041.2
2131 Male, age 76, both hemispheres 1876.1
Dorsal medullary reticular nucleus
nTPM: 1969.8
2040 Female, age 85, both hemispheres 2015.3
2373 Male, age 61, both hemispheres 2005.2
2088 Male, age 76, both hemispheres 1888.8
Dorsal motor vagal complex
nTPM: 2012.3
2807 Female, age 85, both hemispheres 2203.7
2797 Male, age 61, both hemispheres 2178.5
2643 Male, age 74, both hemispheres 2020.8
2813 Female, age 72, unknown 2001.1
2133 Female, age 91, both hemispheres 1962.1
2000 Male, age 74, unknown 1920.0
2185 Male, age 76, both hemispheres 1909.6
2844 Male, age 55, unknown 1902.4
Gigantocellular reticular nuclei, medullary
nTPM: 1988.9
2314 Male, age 61, both hemispheres 2090.4
2387 Female, age 91, both hemispheres 2020.8
2310 Male, age 80, both hemispheres 1985.1
1876 Female, age 85, both hemispheres 1964.3
2022 Male, age 76, right hemisphere 1955.7
2462 Male, age 74, both hemispheres 1917.0
Gigantocellular reticular nuclei, pars
nTPM: 1935.3
2706 Male, age 80, both hemispheres 1984.9
2084 Female, age 85, both hemispheres 1948.2
2336 Male, age 61, both hemispheres 1942.9
2330 Male, age 80, both hemispheres 1933.3
2168 Male, age 76, both hemispheres 1867.3
Inferior olive
nTPM: 2056.8
2628 Female, age 91, both hemispheres 2117.1
2379 Male, age 80, both hemispheres 2073.0
2178 Male, age 61, both hemispheres 2062.9
2085 Female, age 85, both hemispheres 2030.9
2563 Male, age 74, both hemispheres 2000.1
Lateral medullary reticular nucleus
nTPM: 2105.4
2305 Male, age 74, both hemispheres 2186.1
2852 Male, age 80, both hemispheres 2183.2
2190 Female, age 85, both hemispheres 2149.2
2374 Male, age 61, both hemispheres 2072.8
2804 Female, age 91, both hemispheres 2037.3
2044 Male, age 76, both hemispheres 2003.9
Medial vestibular nucleus
nTPM: 2020.9
2624 Male, age 61, both hemispheres 2121.0
2801 Male, age 74, both hemispheres 2067.1
2803 Female, age 91, both hemispheres 2067.1
2743 Female, age 85, both hemispheres 1984.1
2093 Male, age 80, both hemispheres 1951.1
2134 Male, age 76, both hemispheres 1934.8
Motor hypoglossal nucleus
nTPM: 1989.1
2182 Male, age 80, both hemispheres 2083.1
2132 Female, age 85, both hemispheres 2067.2
2125 Female, age 91, both hemispheres 1978.1
2461 Male, age 61, both hemispheres 1932.9
2277 Male, age 76, both hemispheres 1884.3
Nucleus ambiguus
nTPM: 1933.5
2071 Male, age 76, both hemispheres 2076.9
2096 Female, age 85, both hemispheres 1790.2
Nucleus cuneatus
nTPM: 2024.0
2808 Female, age 85, both hemispheres 2187.9
2380 Male, age 80, both hemispheres 2144.9
2564 Male, age 74, both hemispheres 2003.0
2805 Female, age 91, both hemispheres 1984.2
2562 Male, age 61, both hemispheres 1961.8
2100 Male, age 76, both hemispheres 1862.1
Nucleus gracilis
nTPM: 2137.0
2382 Male, age 80, both hemispheres 2176.7
2627 Male, age 74, both hemispheres 2132.2
2299 Female, age 85, both hemispheres 2102.0
Nucleus raphe magnus
nTPM: 1929.0
2051 Male, age 76, both hemispheres 1988.1
2459 Female, age 91, both hemispheres 1977.0
2455 Male, age 74, both hemispheres 1923.0
2328 Male, age 80, both hemispheres 1916.7
2172 Female, age 85, both hemispheres 1886.8
2160 Male, age 61, both hemispheres 1882.4
Nucleus raphe obscurus
nTPM: 2118.7
2142 Male, age 76, midline 2160.7
2845 Female, age 85, midline 2154.4
2800 Male, age 61, midline 2041.0
Nucleus raphe pallidus
nTPM: 2141.5
1924 Male, age 61, midline 2205.7
2145 Male, age 76, midline 2135.0
2183 Male, age 80, midline 2083.9
Nucleus tractus solitarii
nTPM: 1978.0
2144 Female, age 91, right hemisphere 2065.5
2191 Female, age 85, both hemispheres 2060.3
2656 Male, age 76, both hemispheres 1894.2
2307 Male, age 80, both hemispheres 1891.9
Parvicellular reticular nuclei
nTPM: 1965.3
2119 Male, age 80, both hemispheres 2018.9
2095 Male, age 76, both hemispheres 1990.4
2558 Male, age 74, both hemispheres 1886.5
Parvicellular reticular nuclei, medullary
nTPM: 1949.8
2189 Female, age 91, both hemispheres 1976.2
2091 Female, age 85, both hemispheres 1962.1
2181 Male, age 80, left hemisphere 1910.9
Peritrigeminal nucleus
nTPM: 2077.8
2067 Female, age 85, both hemispheres 2178.7
2136 Male, age 76, both hemispheres 2068.0
2179 Male, age 61, both hemispheres 1986.8
Prepositus hypoglossal nucleus
nTPM: 2042.6
2855 Female, age 85, right hemisphere 2089.7
2086 Male, age 80, both hemispheres 1995.5
Spinal trigeminal nucleus, caudal
nTPM: 1977.0
2312 Male, age 61, both hemispheres 2009.3
2308 Male, age 80, both hemispheres 2001.8
2642 Male, age 74, both hemispheres 1987.0
2390 Female, age 91, both hemispheres 1980.0
2447 Male, age 76, both hemispheres 1906.8
Spinal trigeminal nucleus, interpolar
nTPM: 2009.7
2033 Male, age 80, both hemispheres 2058.4
2386 Female, age 85, both hemispheres 2029.5
2389 Female, age 91, both hemispheres 1994.8
2625 Male, age 61, both hemispheres 1990.9
2066 Male, age 76, right hemisphere 1975.0
Spinal vestibular nucleus
nTPM: 2042.8
2384 Male, age 74, both hemispheres 2111.4
2796 Male, age 61, both hemispheres 2111.4
2806 Female, age 85, both hemispheres 2086.0
2780 Male, age 80, both hemispheres 2039.9
2186 Female, age 91, both hemispheres 1957.8
2748 Male, age 76, both hemispheres 1950.0
Ventral medullary reticular nucleus
nTPM: 1975.5
2372 Male, age 61, both hemispheres 2058.9
2060 Male, age 76, both hemispheres 1892.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2078.8
2118 Male, age 80, both hemispheres 2186.4
2741 Female, age 85, both hemispheres 2087.0
2302 Female, age 91, both hemispheres 2048.6
1986 Male, age 76, both hemispheres 2041.9
2180 Male, age 61, both hemispheres 2029.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 918.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 918.8
FF:10174-103C3 60 years, female 994.7
FF:10038-101F2 18-64 years, mixed 912.1
FF:10155-103A2 76 years, female 849.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 955.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 955.0
Samples: 4

Max nTPM: 1176.4
Min nTPM: 781.4
Sample A Female 806.8
Sample B Female 781.4
Sample C Male 1055.4
Sample D Male 1176.4

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 12.4
71378554 Antisense, RP_050517_01_A10, Mouse strain C57BL/6J (56 days, male) 12.4

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