MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:160.6 nTPM
HPA:160.6 nTPM
GTEx:212.7 nTPM
FANTOM5:237.3 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 160.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.2
1870 Female, age 42, unknown 156.7
2219 Male, age 76, both hemispheres 155.4
2666 Male, age 74, left hemisphere 155.0
1827 Male, age 72, unknown 154.7
2411 Female, age 72, unknown 154.6
1830 Male, age 51, unknown 151.8
1833 Male, age 53, unknown 151.3
2828 Female, age 72, unknown 150.3
2019 Male, age 18, unknown 148.3
2586 Male, age 75, left hemisphere 144.4
Dorsal raphe nucleus
nTPM: 147.3
2750 Male, age 76, both hemispheres 152.2
1828 Male, age 53, unknown 151.3
2047 Male, age 72, unknown 147.8
2016 Female, age 72, unknown 142.8
2298 Female, age 72, unknown 142.4
Inferior colliculus
nTPM: 151.0
2849 Male, age 72, unknown 159.2
1890 Male, age 53, unknown 150.2
1848 Female, age 42, unknown 149.1
2097 Female, age 72, unknown 145.3
Median raphe nucleus
nTPM: 160.6
2220 Male, age 76, midline 160.6
Pedunculopontine tegmental nucleus
nTPM: 156.6
2338 Male, age 61, both hemispheres 162.8
2334 Male, age 80, both hemispheres 158.5
1921 Female, age 85, both hemispheres 148.5
Periaquaductal grey, anterior
nTPM: 148.6
2502 Female, age 75, unknown 150.0
1795 Male, age 51, unknown 148.9
1947 Male, age 18, unknown 147.0
Periaquaductal grey, dorsal
nTPM: 152.3
2850 Male, age 76, both hemispheres 158.2
2464 Female, age 72, unknown 152.0
1831 Male, age 72, unknown 151.3
1840 Male, age 53, unknown 147.9
Periaquaductal grey, lateral
nTPM: 147.4
2140 Male, age 76, both hemispheres 152.2
2053 Male, age 18, unknown 145.8
2272 Male, age 74, both hemispheres 144.2
Pretectal area
nTPM: 149.7
1944 Female, age 72, unknown 153.5
1816 Male, age 51, unknown 153.1
1817 Female, age 42, unknown 153.1
1815 Male, age 53, unknown 151.5
2407 Male, age 75, both hemispheres 151.4
2825 Male, age 18, unknown 151.4
2007 Male, age 72, unknown 149.7
2316 Male, age 76, right hemisphere 147.4
2273 Male, age 74, both hemispheres 145.5
2667 Female, age 75, unknown 145.1
2224 Female, age 72, unknown 145.0
Red nucleus
nTPM: 157.0
2725 Female, age 75, unknown 171.7
2588 Male, age 74, left hemisphere 161.5
2503 Female, age 72, unknown 160.7
1865 Male, age 51, unknown 158.6
1904 Male, age 53, unknown 155.7
1954 Female, age 42, unknown 155.1
2823 Male, age 76, right hemisphere 155.1
1821 Female, age 72, unknown 154.9
2227 Male, age 72, unknown 154.5
2769 Male, age 72, unknown 154.2
2584 Male, age 75, left hemisphere 151.9
2785 Male, age 18, unknown 149.9
Substantia nigra
nTPM: 150.5
2699 Male, age 18, unknown 162.1
1941 Male, age 53, unknown 154.1
1916 Female, age 42, unknown 153.6
1889 Female, age 72, unknown 152.7
1851 Male, age 51, unknown 149.6
2241 Male, age 72, unknown 147.1
2409 Female, age 72, unknown 146.9
2583 Male, age 75, right hemisphere 146.8
2590 Female, age 75, unknown 146.0
2665 Male, age 74, both hemispheres 145.9
Superior colliculus
nTPM: 148.7
1895 Male, age 76, right hemisphere 152.1
2587 Male, age 74, left hemisphere 151.8
1913 Female, age 42, unknown 151.4
2261 Male, age 18, unknown 149.9
1796 Male, age 53, unknown 148.9
2087 Female, age 72, unknown 148.7
1839 Male, age 51, unknown 147.6
2668 Female, age 75, unknown 146.1
1995 Male, age 72, unknown 145.9
2664 Male, age 75, both hemispheres 145.2
Ventral tegmental area
nTPM: 152.4
2223 Female, age 72, unknown 161.0
2218 Male, age 76, both hemispheres 158.3
1915 Female, age 42, unknown 151.9
1942 Male, age 51, unknown 148.5
2021 Male, age 53, unknown 147.9
2410 Female, age 72, unknown 146.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 212.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 212.7
Samples: 139

Max nTPM: 429.6
Min nTPM: 135.7
Std nTPM: 47.4
Median nTPM: 202.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 429.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 348.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 342.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 333.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 321.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 320.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 307.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 302.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 298.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 293.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 291.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 237.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.3
FF:10158-103A5 76 years, female 237.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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